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CSPI03G18610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G18610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr3:14251770..14252006
RNA-Seq ExpressionCSPI03G18610
SyntenyCSPI03G18610
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025975.1 uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa]5.3e-2364.1Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        ++C EE+KVKLATFLLQ SA+DWW  HA R  G   + W+EF+ A ++KFYP SFCD KR +FMSL+QGDMTV EYEK
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

KAA0026088.1 uncharacterized protein E6C27_scaffold19G00210 [Cucumis melo var. makuwa]1.0e-2162.82Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        +D P++ KVKLATFLLQDS EDWWIL+  R      + W++F+  FK+KFYP SFCD KR EFM+LVQGDMT A+YEK
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

KAA0060285.1 aldehyde dehydrogenase family 3 member F1 [Cucumis melo var. makuwa]1.9e-2058.44Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYE
        ++ P+ERKVKLATFLLQ   EDWWIL+A R  G  ++ W+ F+  F+ KFYPH F D KR EF++L QG+MT+AEYE
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYE

KAE8646859.1 hypothetical protein Csa_020892 [Cucumis sativus]5.3e-2366.23Show/hide
Query:  DCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        DCP+ERKVKLATFLLQ + ED W LH  R  G G + W+EF   F+NKFY  SFCD K NEF+SLVQGDMT+A+YEK
Subjt:  DCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

TYK04211.1 uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa]5.9e-2261.54Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        ++C EE+KVKLATFLLQ  A+DWW  H  R  G   + W+EF+ A ++KFYP SFCD KR +FMSL+QGDMTV EYEK
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

TrEMBL top hitse value%identityAlignment
A0A5A7SIT3 Retrotrans_gag domain-containing protein4.9e-2262.82Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        +D P++ KVKLATFLLQDS EDWWIL+  R      + W++F+  FK+KFYP SFCD KR EFM+LVQGDMT A+YEK
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

A0A5A7SND8 Retrotrans_gag domain-containing protein2.6e-2364.1Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        ++C EE+KVKLATFLLQ SA+DWW  HA R  G   + W+EF+ A ++KFYP SFCD KR +FMSL+QGDMTV EYEK
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

A0A5A7UZM6 Gag protease polyprotein-like protein1.6e-2063.16Show/hide
Query:  CPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        CPE+RKV+LA FLLQ+ AEDWW +   R    G I+W EFK AF +KFYP SF D KRNEF+ L QG MT+AEYEK
Subjt:  CPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

A0A5A7V337 Aldehyde dehydrogenase family 3 member F19.2e-2158.44Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYE
        ++ P+ERKVKLATFLLQ   EDWWIL+A R  G  ++ W+ F+  F+ KFYPH F D KR EF++L QG+MT+AEYE
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYE

A0A5D3BWX9 Retrotrans_gag domain-containing protein2.9e-2261.54Show/hide
Query:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK
        ++C EE+KVKLATFLLQ  A+DWW  H  R  G   + W+EF+ A ++KFYP SFCD KR +FMSL+QGDMTV EYEK
Subjt:  MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCCCCGAAGAGAGAAAGGTGAAATTAGCAACTTTTCTATTACAAGATAGCGCAGAAGACTGGTGGATTCTCCATGCGGTTAGGACGTGTGGAGAAGGCCTCAT
CGCGTGGAAAGAATTCAAAAATGCCTTCAAGAATAAGTTTTACCCACATTCCTTCTGTGACGTGAAGAGAAATGAGTTTATGAGTTTGGTACAAGGCGACATGACTGTTG
CAGAATATGAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCCCCGAAGAGAGAAAGGTGAAATTAGCAACTTTTCTATTACAAGATAGCGCAGAAGACTGGTGGATTCTCCATGCGGTTAGGACGTGTGGAGAAGGCCTCAT
CGCGTGGAAAGAATTCAAAAATGCCTTCAAGAATAAGTTTTACCCACATTCCTTCTGTGACGTGAAGAGAAATGAGTTTATGAGTTTGGTACAAGGCGACATGACTGTTG
CAGAATATGAAAAATGA
Protein sequenceShow/hide protein sequence
MDCPEERKVKLATFLLQDSAEDWWILHAVRTCGEGLIAWKEFKNAFKNKFYPHSFCDVKRNEFMSLVQGDMTVAEYEK