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CSPI03G19220 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G19220
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionATP-dependent RNA helicase DHX29
Genome locationChr3:15022838..15023816
RNA-Seq ExpressionCSPI03G19220
SyntenyCSPI03G19220
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR014001 - Helicase superfamily 1/2, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK11212.1 DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa]1.6e-5593.33Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS ESSSPLKV+LMSATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKKVLETCFLLY
        A+RYE+SSGKKV  T FLLY
Subjt:  AVRYEISSGKKVLETCFLLY

XP_011651287.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2 [Cucumis sativus]6.8e-5499.1Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        AVRYE+SSGKK
Subjt:  AVRYEISSGKK

XP_031738102.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1 [Cucumis sativus]6.8e-5499.1Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        AVRYE+SSGKK
Subjt:  AVRYEISSGKK

XP_031738103.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X3 [Cucumis sativus]6.8e-5499.1Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        AVRYE+SSGKK
Subjt:  AVRYEISSGKK

XP_031738104.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X4 [Cucumis sativus]6.8e-5499.1Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        AVRYE+SSGKK
Subjt:  AVRYEISSGKK

TrEMBL top hitse value%identityAlignment
A0A0A0L6M0 Helicase ATP-binding domain-containing protein6.9e-6099.17Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKKVLETCFLLY
        AVRYE+SSGKKVLETCFLLY
Subjt:  AVRYEISSGKKVLETCFLLY

A0A1S3C1V6 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X14.8e-5395.5Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS ESSSPLKV+LMSATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        A+RYE+SSGKK
Subjt:  AVRYEISSGKK

A0A1S4E0Z2 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X24.8e-5395.5Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS ESSSPLKV+LMSATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        A+RYE+SSGKK
Subjt:  AVRYEISSGKK

A0A5D3CIT8 DExH-box ATP-dependent RNA helicase DExH77.9e-5693.33Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS ESSSPLKV+LMSATVDSNLFSGYFGNCPVITAEGR+HPVTTYFLEDIYESTGYHLASDSPA
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKKVLETCFLLY
        A+RYE+SSGKKV  T FLLY
Subjt:  AVRYEISSGKKVLETCFLLY

A0A6J1C3N5 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X15.3e-5294.59Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA
        GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRS +SSSPLKV+LMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS +
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPA

Query:  AVRYEISSGKK
        A+RYEISSGKK
Subjt:  AVRYEISSGKK

SwissProt top hitse value%identityAlignment
F4I9Q5 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic3.5e-3769.03Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSS-PLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP
        GD TL  +THIIVDEVHERSLLGDFLL++LK+LIEK+S +++S  LKV+LMSATVD++LFS YFG+CPVITA+GR HPVTT+FLE+IYES  Y LA DSP
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSS-PLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP

Query:  AAVRYEISSGKKV
        AA+R + S   K+
Subjt:  AAVRYEISSGKKV

Q6P5D3 Putative ATP-dependent RNA helicase DHX571.6e-2155.56Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP
        GD TL G+THIIVDEVHER+   DFLL+VLK+++ +R+      L+V+LMSAT+D+ LFS YF  CPVIT  GR  PV  +FLED    T Y L   SP
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP

Q6PGC1 ATP-dependent RNA helicase DHX293.6e-2152.58Show/hide
Query:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS
        D  L  ++H+IVDEVHERS+  DFLLV+LK +++KR     S L ++LMSATVDS+ FS YF +CP++   GR +PV  + LEDI E TG+ L  DS
Subjt:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS

Q7Z478 ATP-dependent RNA helicase DHX293.6e-2151.55Show/hide
Query:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS
        D  L+ ++H+IVDEVHERS+  DFLL++LK +++KR     S L ++LMSATVDS  FS YF +CP++   GR +PV  + LEDI E TG+ L  DS
Subjt:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDS

Q9C6G0 DExH-box ATP-dependent RNA helicase DExH4, chloroplastic1.3e-3668.14Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSP-LKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP
        GD TL  +THIIVDEVHERSL+GDFLL++LK+LIEK+S +++ P LKV+LMSATVD++ FS YFG CP+ITA+GR HPVTTYFLEDIYE T Y LASDSP
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSP-LKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP

Query:  AAVRYEISSGKKV
        AA+  + S   K+
Subjt:  AAVRYEISSGKKV

Arabidopsis top hitse value%identityAlignment
AT1G48650.1 DEA(D/H)-box RNA helicase family protein4.0e-2047.37Show/hide
Query:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLAS
        D +L G+TH++VDE+HER +  DFLL+VLK+L+ +R       LK++LMSAT+++ LFS YFG  P +   G  +PV  +FLED  E++GY L +
Subjt:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLAS

AT1G58050.1 RNA helicase family protein9.6e-3868.14Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSP-LKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP
        GD TL  +THIIVDEVHERSL+GDFLL++LK+LIEK+S +++ P LKV+LMSATVD++ FS YFG CP+ITA+GR HPVTTYFLEDIYE T Y LASDSP
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSP-LKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP

Query:  AAVRYEISSGKKV
        AA+  + S   K+
Subjt:  AAVRYEISSGKKV

AT1G58060.1 RNA helicase family protein2.5e-3869.03Show/hide
Query:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSS-PLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP
        GD TL  +THIIVDEVHERSLLGDFLL++LK+LIEK+S +++S  LKV+LMSATVD++LFS YFG+CPVITA+GR HPVTT+FLE+IYES  Y LA DSP
Subjt:  GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSS-PLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSP

Query:  AAVRYEISSGKKV
        AA+R + S   K+
Subjt:  AAVRYEISSGKKV

AT2G01130.1 DEA(D/H)-box RNA helicase family protein6.2e-2152.69Show/hide
Query:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHL
        D  L G+TH+IVDE+HER +  DFLL++LK+L+ +R     S LK++LMSAT+D+ LFS YFG   VI   G  +PV ++FLEDI E T Y L
Subjt:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHL

AT5G04895.1 DEA(D/H)-box RNA helicase family protein1.1e-2049.47Show/hide
Query:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLAS
        D  L G+TH+ VDE+HER +  DFL++VLK L+ +R       L++VLMSAT+++ LFS Y+G  P I   G  HPV  +FLED+ E TGY L S
Subjt:  DETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAGATGAAACTTTGACTGGTATCACTCATATTATAGTTGATGAAGTACATGAACGGTCTCTGCTGGGCGATTTTCTCTTAGTTGTTTTGAAGAATCTGATTGAGAAACG
TTCTGTTGAAAGTTCATCTCCCCTGAAGGTTGTTCTAATGTCTGCGACAGTTGATTCAAATCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTA
GAATGCATCCTGTGACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGATACCACCTCGCTTCAGACTCCCCCGCTGCCGTACGATATGAAATATCAAGTGGCAAA
AAGGTTCTGGAAACATGTTTCCTACTCTATTAA
mRNA sequenceShow/hide mRNA sequence
GGAGATGAAACTTTGACTGGTATCACTCATATTATAGTTGATGAAGTACATGAACGGTCTCTGCTGGGCGATTTTCTCTTAGTTGTTTTGAAGAATCTGATTGAGAAACG
TTCTGTTGAAAGTTCATCTCCCCTGAAGGTTGTTCTAATGTCTGCGACAGTTGATTCAAATCTTTTCTCAGGATACTTTGGTAACTGCCCTGTAATCACTGCAGAGGGTA
GAATGCATCCTGTGACCACCTACTTTCTTGAAGATATATATGAGAGTACTGGATACCACCTCGCTTCAGACTCCCCCGCTGCCGTACGATATGAAATATCAAGTGGCAAA
AAGGTTCTGGAAACATGTTTCCTACTCTATTAA
Protein sequenceShow/hide protein sequence
GDETLTGITHIIVDEVHERSLLGDFLLVVLKNLIEKRSVESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYHLASDSPAAVRYEISSGK
KVLETCFLLY