CuGenDBv2

Gene ID	CSPI03G19240
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2
Genome location	Chr3:15050281..15051459
RNA-Seq Expression	CSPI03G19240
Synteny	CSPI03G19240
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK11213.1 DExH-box ATP-dependent RNA helicase DExH7 [Cucumis melo var. makuwa]

1.8e-45

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Query:  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES
        DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSHSFGES
Subjt:  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES

XP_011651287.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2 [Cucumis sativus]

2.0e-47

96.15

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F+   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SFGE
Subjt:  SFGE

XP_031738102.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1 [Cucumis sativus]

2.0e-47

96.15

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F+   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SFGE
Subjt:  SFGE

XP_031738103.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X3 [Cucumis sativus]

2.0e-47

96.15

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F+   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SFGE
Subjt:  SFGE

XP_031738104.1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X4 [Cucumis sativus]

2.0e-47

96.15

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F+   DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SFGE
Subjt:  SFGE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAE3 Uncharacterized protein

2.5e-48

100

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Query:  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES
        DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES
Subjt:  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES

Query:  K
        K
Subjt:  K

A0A1S3C1V6 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1

1.2e-45

91.35

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F+   DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SFGE
Subjt:  SFGE

A0A1S4E0Z2 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2

1.2e-45

91.35

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F+   DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SFGE
Subjt:  SFGE

A0A5D3CH50 DExH-box ATP-dependent RNA helicase DExH7

8.9e-46

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Query:  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES
        DAQNKVAAFALCHLFPDLP HVALIEPYASLVMQWKAGESISKVDD+EKDRRASFVDSLLDASNIGSASKTLVGK+E+LNIEDDKKPRAL+LNSHSFGES
Subjt:  DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGES

A0A6J1E7M1 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic

1.7e-36

77.88

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Query:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH
        F    DAQNKVAAFAL HLFPD+PVH+ALIEPYA+LVMQWKAGES SKVDD+EKDRRASFVDSLLDAS+  SASKT VGK+E+L+IEDDKKP   +L+SH
Subjt:  FKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSH

Query:  SFGE
        SF E
Subjt:  SFGE

SwissProt top hits

e value

%identity

Alignment

F4I9Q5 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic

6.6e-14

58.82

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Query:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRASFVDSLLD
        +F+ + DAQNKVAAFAL  LF DLPVH A+ EPYASLV+ WK  E + + +   E+DRRA+FVD LL+
Subjt:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRASFVDSLLD

Q9C6G0 DExH-box ATP-dependent RNA helicase DExH4, chloroplastic

2.3e-14

58.57

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Query:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASN
        DF+ + DAQN+VAAFAL  LF DLPVH A+ EPYASLV+ WK  ES+  +   E+ RR  FV+SLL+A N
Subjt:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASN

Arabidopsis top hits

e value

%identity

Alignment

AT1G58050.1 RNA helicase family protein

1.6e-15

58.57

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Query:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASN
        DF+ + DAQN+VAAFAL  LF DLPVH A+ EPYASLV+ WK  ES+  +   E+ RR  FV+SLL+A N
Subjt:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASN

AT1G58060.1 RNA helicase family protein

4.7e-15

58.82

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Query:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRASFVDSLLD
        +F+ + DAQNKVAAFAL  LF DLPVH A+ EPYASLV+ WK  E + + +   E+DRRA+FVD LL+
Subjt:  DFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESI-SKVDDDEKDRRASFVDSLLD

Sequences

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CDS sequence

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ATGAGGCCAGATTTCAAGAGAATGGTTGATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATA
TGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATA
TTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTTGGGGAAAGTAAG
TAG

mRNA sequence

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Protein sequence

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MRPDFKRMVDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGESK

CSPI03G19240 (gene) of Cucumber (PI 183967) v1 genome