CuGenDBv2

Gene ID	CSPI03G19410
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	Chr3:15198925..15204646
RNA-Seq Expression	CSPI03G19410
Synteny	CSPI03G19410
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-153

88.82

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Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAAQ SSFR PLA+NL ++ F+EARF   PSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_004146247.1 uncharacterized protein LOC101221944 [Cucumis sativus]

2.4e-170

99.69

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Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

XP_008456024.1 PREDICTED: putative RNA-binding protein YlmH isoform X2 [Cucumis melo]

3.3e-164

95.61

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Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

1.8e-154

92.14

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Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARF   PSSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFAVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

7.4e-156

91.82

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Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI A WSLRRAAQ SSFR PLA+NLN+L F+EARF   PSSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRR VLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAREKLGDI+LQEE GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG
        VDFL SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKFAVELIRYV
Subjt:  EINSTKKGKFAVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

1.1e-170

99.69

Show/hide

Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

1.6e-164

95.61

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Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
        MAAT T+I ALWSLR A+QFSSFRRPL +NLNRL F+E RFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI++QEETGAQVVIVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPE

Query:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
        LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI
Subjt:  LVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINSTKKGKFAVELIRYV
        GEINSTKKGKFAVELIRYV
Subjt:  GEINSTKKGKFAVELIRYV

A0A6J1CLT4 uncharacterized protein LOC111012786 isoform X2

6.3e-153

91.82

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Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARF   PSSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLI SGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFAVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

8.8e-155

92.14

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Query:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        ATSI ALWSLRRAAQ SSFR PLALNL+   F++ARF   PSSP G+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLT
Subjt:  ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDI+LQ E GAQVV+VPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG
        VDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EINSTKKGKF+VELIRYV
Subjt:  EINSTKKGKFAVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

1.1e-152

88.82

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Query:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAAQ SS R PLA+NL+++ F+EARF   PSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARF---PSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVI

Query:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSL KVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

3.0e-19

30.67

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGA
        T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LG+++G G+ R+K GDI+   ET  
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGA

Query:  QVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVS
        Q+++  +  DF+ + L + G   VS  +I L+ L       +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+ 
Subjt:  QVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVS

Query:  GKGRLKIGEI-NSTKKGKFAVELIR
        G GR  + +I   TKK K+ V   R
Subjt:  GKGRLKIGEI-NSTKKGKFAVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

1.7e-118

68.55

Show/hide

Query:  TSIAALWSLRRAAQFSSFRRPLALNLNR--LCFNEARFPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT
        TS+A  W + R A F S      L+ N+  L  N +   S PL  S +  C   +A+KGD+D LL GVGD+ V  +VKQIL MA+R+ S+REVLHT+FLT
Subjt:  TSIAALWSLRRAAQFSSFRRPLALNLNR--LCFNEARFPSSPLGTSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLT

Query:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL
        PP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+REKLGDI++QEE GAQV+IVPEL
Subjt:  PPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPEL

Query:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG
        VDF++++L KVGNV V+C++IPL ALEYEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD+VSVSGKGRLKIG
Subjt:  VDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIG

Query:  EINSTKKGKFAVELIRYV
        EIN TKKGKFAVE+IRY+
Subjt:  EINSTKKGKFAVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCAACGGCAACGAGCATTGCAGCTCTGTGGAGTTTAAGAAGGGCTGCTCAGTTTTCGAGTTTCCGAAGACCCCTTGCCCTTAATCTCAATAGGCTCTGCTTTAA
CGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTG
TTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTA
GCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCAGA
CATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTG
ATATCATGCTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTTCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACG
AGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTAGATGCTATAGCAAGTGCTGGATTCAAGATTTC
AAGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGCGATATTGTTTCTGTTAGTG
GCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATATGTGTAA

mRNA sequence

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AGTTTGGAACGGTTGCGCGTTGGCACTTACTGAGCCATGGCCGCAACGGCAACGAGCATTGCAGCTCTGTGGAGTTTAAGAAGGGCTGCTCAGTTTTCGAGTTTCCGAAG
ACCCCTTGCCCTTAATCTCAATAGGCTCTGCTTTAACGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATA
TTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAAC
TTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTC
TGTTGGTCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAA
TTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATGCTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTTCTGATATCATCA
CTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAG
GGTAGATGCTATAGCAAGTGCTGGATTCAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAA
CCATTTTAAAGACTGGCGATATTGTTTCTGTTAGTGGCAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCTGTTGAGCTTATCAGATAT
GTGTAAGCTCTAGAGATATTGTCTATTGGAGATGAACTGGGTAAGTCTTCACAGGAGCCTCTTTGTGGGGTGAAATCAGGATTGCTTCCTTTGGAATAACTGAAGTAAGT
CATTATTCAACATGACATTAATCTGATTGTATATGTGAAAATCCGAACACTTATTCATCCATTCTTAAAAATTTCATTGGGAAAATCTGTCTCAGCATTTCAATGTCAAT
GCTTTTTAGTTCTTTTGTTTCTGGTTGTGTTGCCTTCTTTTCTGGAATGAATTCGTTCAAACTAATGTTGTCTAAGGAGGGAATTTAAGCACAAAGTTATAGCTTCACAT
TAACTATTTGTTATTCCAAAGATTTATCTCATC

Protein sequence

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MAATATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESML
AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCT
RIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYV

CSPI03G19410 (gene) of Cucumber (PI 183967) v1 genome