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CSPI03G19550 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G19550
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationChr3:15335327..15339317
RNA-Seq ExpressionCSPI03G19550
SyntenyCSPI03G19550
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7803378.1 transcription elongation factor 1-like protein [Senna tora]1.2e-4196.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI ALSE IDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

XP_004146241.1 transcription elongation factor 1 homolog [Cucumis sativus]2.9e-43100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

XP_010090451.1 transcription elongation factor 1 homolog isoform X1 [Morus notabilis]7.2e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITAL+E IDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

XP_028780339.1 transcription elongation factor 1 homolog [Prosopis alba]1.2e-4195.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQESFSTTITALSE ID+YSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]2.6e-4494.62Show/hide
Query:  LTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        ++ QDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFSTTITALSEAID+YSEWIDECERVNNLEDDAA
Subjt:  LTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

TrEMBL top hitse value%identityAlignment
A0A0A0LAG5 Transcription elongation factor 1 homolog1.4e-43100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

A0A1S3C2B7 Transcription elongation factor 1 homolog1.4e-43100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

A0A2P5DXC0 Transcription elongation factor 1 homolog1.0e-4194.32Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+TAL+E IDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

A0A6A1W9X5 Transcription elongation factor 1 homolog1.0e-4194.32Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQESFSTTITAL+E IDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

W9R774 Transcription elongation factor 1 homolog3.5e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITAL+E IDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog8.0e-2053.66Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSE +D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN

P36053 Transcription elongation factor 14.7e-2052.44Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNN
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I +LS+ +D+YS+W D  E VN+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNN

P60002 Transcription elongation factor 1 homolog8.0e-2053.66Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT LSE +D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog1.3e-3886.05Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTITAL+EAIDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD

Q8LHP0 Transcription elongation factor 1 homolog1.3e-4190.7Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+ AL+E IDIYSEWIDECERVNN+EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein9.4e-4086.05Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTITAL+EAIDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTTTTATCCCTTCAATGTATGCTTATATCCATGTTGCCTTTGAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCCTTCAAAGAAGTTTATCTAGACTATCA
AAATACAATGACTAGCATGGTTCAAGCAACAAATAATATTTTCAGAGATGAAGGCTTACTGCTCTATAAATACCACCCCTCCTCCTCCTTTTTGGTTGCATTCTTCAATC
CGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCC
CCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGC
CTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTG
AAGATGATGCGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACTTTTATCCCTTCAATGTATGCTTATATCCATGTTGCCTTTGAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCCTTCAAAGAAGTTTATCTAGACTATCA
AAATACAATGACTAGCATGGTTCAAGCAACAAATAATATTTTCAGAGATGAAGGCTTACTGCTCTATAAATACCACCCCTCCTCCTCCTTTTTGGTTGCATTCTTCAATC
CGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCC
CCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGC
CTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTG
AAGATGATGCGGCCTAG
Protein sequenceShow/hide protein sequence
MRLLSLQCMLISMLPLRFNWSRQLHEFSFKEVYLDYQNTMTSMVQATNNIFRDEGLLLYKYHPSSSFLVAFFNPTCATISTANDYLSQLYHRSASLTTQDMGKRKSRAKP
PPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA