CuGenDBv2

Gene ID	CSPI03G19680
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1
Genome location	Chr3:15412193..15414542
RNA-Seq Expression	CSPI03G19680
Synteny	CSPI03G19680
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050522.1 KH domain-containing protein [Cucumis melo var. makuwa]

2.5e-86

97.04

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Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_004146231.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucumis sativus]

1.6e-88

100

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Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]

2.5e-86

97.04

Show/hide

Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_016901917.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucumis melo]

1.0e-79

97.42

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Query:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

XP_038891427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Benincasa hispida]

1.2e-80

91.12

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Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        M+TPISTLSFASP LP RIE  PRISPA NFR PFQ+VARKQ++GE SGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVR+VKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPH+LKQE+T
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9J8 Uncharacterized protein

7.6e-89

100

Show/hide

Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1

1.2e-86

97.04

Show/hide

Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2

4.9e-80

97.42

Show/hide

Query:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A5A7U3Y9 KH domain-containing protein

1.2e-86

97.04

Show/hide

Query:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
        MATPISTLSFASP LPLRIEANPRISPALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE
Subjt:  MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSE

Query:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        DNRFDFVNEVAAEAKEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  DNRFDFVNEVAAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

A0A5D3CIV3 KH domain-containing protein

4.2e-79

96.77

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Query:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
        LPLRIEANPRIS ALNFRPPFQ+VARKQ++GEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA
Subjt:  LPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEA

Query:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KEYVESNRDEYGG+KKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
Subjt:  KEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

4.1e-47

66.43

Show/hide

Query:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGG+K
Subjt:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

2.9e-48

66.43

Show/hide

Query:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK
        N R  FQ         + +GRRVWRRR LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGG+K
Subjt:  NFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGTK

Query:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        KAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  KAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

AT5G24314.2 plastid transcriptionally active7

4.6e-46

62.84

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Query:  NFRPPFQLVARKQKSGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN
        N R  FQ         + +GRRVWRRR         LTKKDDM  YKM R+PF+EEQVR+++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ N
Subjt:  NFRPPFQLVARKQKSGEVSGRRVWRRRK--------LTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESN

Query:  RDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT
        RDEYGG+KKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  RDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

Sequences

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CDS sequence

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ATGGCTACTCCAATCTCAACGCTCTCCTTTGCTTCCCCTTCATTGCCGCTCAGGATTGAGGCGAATCCCCGAATTTCTCCTGCCTTGAACTTTCGTCCCCCGTTTCAGTT
GGTCGCTAGAAAACAGAAAAGTGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCAATCTACAAAATGGATCGAATCCCAT
TCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAAGGGAAGCTCATAACAATGGACATTGAAAGACTATTATTATCAGAGGACAATCGCTTTGATTTTGTGAATGAGGTT
GCAGCTGAGGCTAAGGAATATGTTGAGAGCAACCGCGATGAATATGGGGGTACCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTTTATCG
GCCAGATGCTTATGCAGAAGATGACCCATTTAAACCCGGACCTCATTATCTAAAACAAGAATTTACTTAA

mRNA sequence

Show/hide mRNA sequence

GCTCGCGTGACGAAAGTAATAACATCATTCGAAAATGAAGATAGGACAGCCATGGCTACTCCAATCTCAACGCTCTCCTTTGCTTCCCCTTCATTGCCGCTCAGGATTGA
GGCGAATCCCCGAATTTCTCCTGCCTTGAACTTTCGTCCCCCGTTTCAGTTGGTCGCTAGAAAACAGAAAAGTGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAA
AATTGACAAAGAAGGATGACATGTCAATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAAGGGAAGCTCATAACAATGGACATT
GAAAGACTATTATTATCAGAGGACAATCGCTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTTGAGAGCAACCGCGATGAATATGGGGGTACCAAGAA
AGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTTTATCGGCCAGATGCTTATGCAGAAGATGACCCATTTAAACCCGGACCTCATTATCTAAAACAAG
AATTTACTTAACCTGATTACAAAATCCATTTTCTTATACAAACTGTCAATGCATTAATCTGATTTTTCCAGTTTTTAAATGTTAGCTAGTGCCTACGTCTCTTCTGATTA
AGAATTGTGCTTGCCTCATTCTCACGAGTTTTTTCTCTAACCAAATATTACCTCTTTAAACTCCTACTTTTCTATTCGTTATGTTTCATCCAACATTCCCAATAGGAGGG
AAGATTGTTATCGACCAACTAATGAAACCATTAGAAAGTTTCTTTTATGAA

Protein sequence

Show/hide protein sequence

MATPISTLSFASPSLPLRIEANPRISPALNFRPPFQLVARKQKSGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEV
AAEAKEYVESNRDEYGGTKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT

CSPI03G19680 (gene) of Cucumber (PI 183967) v1 genome