; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G19860 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G19860
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr3:15514941..15515620
RNA-Seq ExpressionCSPI03G19860
SyntenyCSPI03G19860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN57685.2 hypothetical protein Csa_011032 [Cucumis sativus]1.2e-2568.37Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFF
        MITRAKSGMFKSKAW             TCIKDALPTPQ                 WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRY AQLVAKGFF
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFF

XP_016899477.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]3.3e-2047.69Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        MIT+AKS +FK K  ++++A + +LTEP  IK AL TPQ                 WHLVP SP Q + G KWVFRLKRN+D SI+ Y  +LVAKG F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSIVVSKG
        H  +DF         ASTIRV+L++ V+ G
Subjt:  HHDIDFL--------ASTIRVVLSIVVSKG

XP_016902198.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo]2.2e-1651.89Show/hide
Query:  LTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIRVVLS
        +TEP  +KDAL TPQ                 W LVP SP QN+VG+KWVFRLKR++D SI RY A++VAKG F+QH  +DF         ASTIRVVLS
Subjt:  LTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIRVVLS

Query:  IVVSKG
        I V  G
Subjt:  IVVSKG

XP_022158567.1 uncharacterized protein LOC111025020 [Momordica charantia]8.5e-1646.83Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        MITRAK  +FK K W+  +  + T TEPT +KDAL TPQ                 WH VPSS   N+VG+KW+F++K NS   IQ Y A+LVAK  F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSIV
        +  IDF         ASTIRVVL++V
Subjt:  HHDIDFL--------ASTIRVVLSIV

XP_038885859.1 uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida]1.0e-2150Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        MITRAK+G+FK K+W+ S  TN + TE T I   L TPQW                  LVPSSP   IVGNKW+FRLKRN D  IQRY A+LV KG F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSIVVSKG
        HH +D          +STIRV +++VVS+G
Subjt:  HHDIDFL--------ASTIRVVLSIVVSKG

TrEMBL top hitse value%identityAlignment
A0A1S4DU00 uncharacterized mitochondrial protein AtMg00820-like1.6e-2047.69Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        MIT+AKS +FK K  ++++A + +LTEP  IK AL TPQ                 WHLVP SP Q + G KWVFRLKRN+D SI+ Y  +LVAKG F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSIVVSKG
        H  +DF         ASTIRV+L++ V+ G
Subjt:  HHDIDFL--------ASTIRVVLSIVVSKG

A0A1S4E1U4 uncharacterized mitochondrial protein AtMg00810-like isoform X21.1e-1651.89Show/hide
Query:  LTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIRVVLS
        +TEP  +KDAL TPQ                 W LVP SP QN+VG+KWVFRLKR++D SI RY A++VAKG F+QH  +DF         ASTIRVVLS
Subjt:  LTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIRVVLS

Query:  IVVSKG
        I V  G
Subjt:  IVVSKG

A0A5D3BCV9 Putative mitochondrial protein3.5e-1548.6Show/hide
Query:  TLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIRVVL
        +LTEP  IK AL TPQ                 WHLVP SP Q + G KWVFRLKRN+D SI+ Y  +LVAKG F+QH  +DF         ASTIRV+L
Subjt:  TLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL--------ASTIRVVL

Query:  SIVVSKG
        ++ V+ G
Subjt:  SIVVSKG

A0A6J1DXJ5 uncharacterized protein LOC1110250204.1e-1646.83Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        MITRAK  +FK K W+  +  + T TEPT +KDAL TPQ                 WH VPSS   N+VG+KW+F++K NS   IQ Y A+LVAK  F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQ-----------------WHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSIV
        +  IDF         ASTIRVVL++V
Subjt:  HHDIDFL--------ASTIRVVLSIV

A0A803NSQ7 Uncharacterized protein2.0e-1542.31Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        MITRAK+G+FK +A+  ++  +    EP  + +AL  P W+                 LVP S  QN++GNKWV+R K N+D S QR+ A+LVAKG F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDF--------LASTIRVVLSIVVSKG
           IDF         AST+R+VL+I V+KG
Subjt:  HHDIDF--------LASTIRVVLSIVVSKG

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-0443.86Show/hide
Query:  KWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDF--------LASTIRVVLSIVVS
        KWVF+LK++ DC + RY A+LV KG F Q   IDF          ++IR +LS+  S
Subjt:  KWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDF--------LASTIRVVLSIVVS

P92520 Uncharacterized mitochondrial protein AtMg008204.0e-0833.6Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTP-----------------QWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        M+TR+K+G+ K     + + T     EP  +  AL  P                  W LVP    QNI+G KWVF+ K +SD ++ R  A+LVAKG F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTP-----------------QWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSI
           I F+         +TIR +L++
Subjt:  HHDIDFL--------ASTIRVVLSI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.4e-0731.54Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LVPSSP-YQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFY
        M TRAK+G+ K     + + +    +EP     AL   +W                  LVP  P +  IVG +W+F  K NSD S+ RY A+LVAKG + 
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWH-----------------LVPSSP-YQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFY

Query:  QHHDIDFL--------ASTIRVVLSIVVSK
        Q   +D+         +++IR+VL + V +
Subjt:  QHHDIDFL--------ASTIRVVLSIVVSK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.7e-0731.58Show/hide
Query:  MITRAKSGMFKSK---AWLTSSATNLTLTEPTCIKDALPTPQWH------------------LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKG
        M TRAK G+ K     ++ TS A N   +EP     A+   +W                   + P  P   IVG +W+F  K NSD S+ RY A+LVAKG
Subjt:  MITRAKSGMFKSK---AWLTSSATNLTLTEPTCIKDALPTPQWH------------------LVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKG

Query:  FFYQHHDIDFL--------ASTIRVVLSIVVSK
         + Q   +D+         +++IR+VL + V +
Subjt:  FFYQHHDIDFL--------ASTIRVVLSIVVSK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.6e-0744.44Show/hide
Query:  TPQWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL
        T  W +    P +  +G KWV+++K NSD +I+RY A+LVAKG + Q   IDF+
Subjt:  TPQWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFL

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.8e-0933.6Show/hide
Query:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTP-----------------QWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ
        M+TR+K+G+ K     + + T     EP  +  AL  P                  W LVP    QNI+G KWVF+ K +SD ++ R  A+LVAKG F+Q
Subjt:  MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTP-----------------QWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQ

Query:  HHDIDFL--------ASTIRVVLSI
           I F+         +TIR +L++
Subjt:  HHDIDFL--------ASTIRVVLSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCTAC
TCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGCTC
AATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGA
mRNA sequenceShow/hide mRNA sequence
CCAAAATTCACTTCCATCTATTTCTGTAGATAACTCTTTCTGACTGGCTTCAACTCCAATTTTTCCACGTACCTCTGTTCCTCCGTCCATCCAACTTCGATCCACCCACC
TGATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGCTCACATCCTCCGCCACCAATTTGACCCTTACCGAACCGACATGTATTAAAGACGCTCTACCT
ACTCCACAATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAACGC
TCAATTGGTTGCCAAAGGTTTTTTTTATCAACACCATGACATTGATTTCTTAGCATCCACGATTCGTGTAGTGCTTAGTATTGTCGTGTCTAAAGGATGACAACTTCGTC
AACTCGATTTCAATAATGTTTTTCTTAATAGACGTCTTGAAGAAACTGTGTACATGACACAACCTCCCGAGTATGTTAATCCATCATTTTTCGACCATGTTTGTAAGCTT
GACAAAGCTATTTATGGCTTGAAGCAATTTCCACGTGCGTGGAATACAACTTTTTCCAGAAAATTACTCAGTTGGGGTTTTGTGAATTCATGATCTGATTCTTCTCTGTT
TATATTTCGCCGTTAGAACT
Protein sequenceShow/hide protein sequence
MITRAKSGMFKSKAWLTSSATNLTLTEPTCIKDALPTPQWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYNAQLVAKGFFYQHHDIDFLASTIRVVLSIVVSKG