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CSPI03G20100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G20100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontransportin-3 isoform X2
Genome locationChr3:15879400..15882797
RNA-Seq ExpressionCSPI03G20100
SyntenyCSPI03G20100
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011651341.1 transportin-3 isoform X1 [Cucumis sativus]5.6e-5798.21Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNVT
        VREFADGHRNVT
Subjt:  VREFADGHRNVT

XP_011651344.1 transportin-3 isoform X3 [Cucumis sativus]5.6e-5798.21Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNVT
        VREFADGHRNVT
Subjt:  VREFADGHRNVT

XP_022983999.1 transportin-3 isoform X1 [Cucurbita maxima]7.5e-5491.89Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCAT+LQQLAAICSVSERTDLK +LRWESLHGWLLSAVQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNV
        VREFADGHRN+
Subjt:  VREFADGHRNV

XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]7.5e-5491.89Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCAT+LQQLAAICSVSERTDLK +LRWESLHGWLLSAVQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNV
        VREFADGHRN+
Subjt:  VREFADGHRNV

XP_031739063.1 transportin MOS14 isoform X2 [Cucumis sativus]5.6e-5798.21Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNVT
        VREFADGHRNVT
Subjt:  VREFADGHRNVT

TrEMBL top hitse value%identityAlignment
A0A0A0L9N1 Uncharacterized protein2.7e-5799.1Show/hide
Query:  QVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV
        +VHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV
Subjt:  QVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRLV

Query:  REFADGHRNVT
        REFADGHRNVT
Subjt:  REFADGHRNVT

A0A6J1F1T5 transportin-3 isoform X13.6e-5491.89Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCAT+LQQLAAICSVSERTDLK +LRWESLHGWLLSAVQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNV
        VREFADGHRN+
Subjt:  VREFADGHRNV

A0A6J1F7N6 transportin-3 isoform X23.6e-5491.89Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCAT+LQQLAAICSVSERTDLK +LRWESLHGWLLSAVQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNV
        VREFADGHRN+
Subjt:  VREFADGHRNV

A0A6J1J0X3 transportin-3 isoform X23.6e-5491.89Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCAT+LQQLAAICSVSERTDLK +LRWESLHGWLLSAVQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNV
        VREFADGHRN+
Subjt:  VREFADGHRNV

A0A6J1J969 transportin-3 isoform X13.6e-5491.89Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL
        ++VHKCAT+LQQLAAICSVSERTDLK +LRWESLHGWLLSAVQALPLEYLKPGEVE+LVPLWLKALGDAACDYLESKSCDE+K NYGHMQGKGGRVLKRL
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQGKGGRVLKRL

Query:  VREFADGHRNV
        VREFADGHRN+
Subjt:  VREFADGHRNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12930.1 ARM repeat superfamily protein4.9e-3565.18Show/hide
Query:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCD--EVKANYGHMQGKGGRVLK
        ++VHKC+TILQQLAAICS+ ERT  K +L W+SL GWL SAV ALP EYLK GE ES+V  W +ALG A  DYLE+KSC+     ++ GHMQGK GR LK
Subjt:  TQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCD--EVKANYGHMQGKGGRVLK

Query:  RLVREFADGHRN
        RLVR+FAD HRN
Subjt:  RLVREFADGHRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCTCTCTGATACCATATTGAAAGTAGACACAAAGAACACACAGATTTACATGGCAACTCAAGTTCACAAGTGTGCAACAATTCTGCAACAGTTGGCAGCAATTTG
CAGTGTCAGTGAAAGAACAGACTTGAAACCTATCCTGCGCTGGGAATCTTTGCATGGCTGGCTACTATCAGCGGTGCAGGCTCTCCCACTTGAATATTTAAAACCAGGGG
AAGTTGAAAGTCTTGTCCCACTATGGTTAAAGGCTCTTGGAGATGCAGCCTGTGACTATCTTGAAAGTAAAAGTTGTGACGAAGTAAAGGCTAATTATGGACATATGCAA
GGGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTCCGTGAATTTGCTGATGGTCACCGCAATGTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCTCTCTGATACCATATTGAAAGTAGACACAAAGAACACACAGATTTACATGGCAACTCAAGTTCACAAGTGTGCAACAATTCTGCAACAGTTGGCAGCAATTTG
CAGTGTCAGTGAAAGAACAGACTTGAAACCTATCCTGCGCTGGGAATCTTTGCATGGCTGGCTACTATCAGCGGTGCAGGCTCTCCCACTTGAATATTTAAAACCAGGGG
AAGTTGAAAGTCTTGTCCCACTATGGTTAAAGGCTCTTGGAGATGCAGCCTGTGACTATCTTGAAAGTAAAAGTTGTGACGAAGTAAAGGCTAATTATGGACATATGCAA
GGGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTCCGTGAATTTGCTGATGGTCACCGCAATGTGACTTAATTGTTGCATGGCATTTATACATCATTAGAGGACCCCAGCTC
TTTGCTTTTCTGCTTATGGCCTCTTCTGTTGTTGAGGTGCATTGGGCAGTTGAATGTTGAAGCTGGTTTGGAAACTTTGGTCAATATTGGGCAATTTCCTGCATAAAATT
ATAACCATCCTCTGTAGCTACTTCTCTTCTTTCTTTTTTGTACAGTCCCGTATTTAAATTTTGTTAAATCACCAAAGGTTGAAATTTTGTTCATATCATTCATTCTTTTT
TGCCTTTCAAGCCCAGGTCAGAATTTTGTGGCTATTGGAGATGGTACAGTAATTTTTTCTAATTACCTCCAAGCTGCTCGGTGTTCGTGAGATAGCCGTATAAGCTGTGG
TTACTCACTCTTGAGGAATGAAAAGACGAACTAGAAACACATTATTTATTGGTAAAGAAAACATTGCAGAAGCTAAAAAAATACTTAGCGAAGATCGGACGAATTCCTTG
GATGAAAGCCAGCGTTTTGGGGATGAACAGATGTGATCTTGTTTCCTCCACTTCTCTTACAATAGAAACGACAGTTAATAAAGTTGCTTGTATTGAAGTATTTCACATTG
TAGTGTCTTAAATTTGACCCACGAAGTTTGGAGTTTTTTTGCTTTTGTTTTTGTTTCTTTT
Protein sequenceShow/hide protein sequence
MSLSDTILKVDTKNTQIYMATQVHKCATILQQLAAICSVSERTDLKPILRWESLHGWLLSAVQALPLEYLKPGEVESLVPLWLKALGDAACDYLESKSCDEVKANYGHMQ
GKGGRVLKRLVREFADGHRNVT