; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G20710 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G20710
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like
Genome locationChr3:16727431..16729173
RNA-Seq ExpressionCSPI03G20710
SyntenyCSPI03G20710
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR003656 - Zinc finger, BED-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065439.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]1.7e-4082.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
KAA0067548.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]1.7e-4082.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
KAE8648052.1 hypothetical protein Csa_005813 [Cucumis sativus]7.2e-4489.32Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYKE
        METS GQHSETSPSHSPSP  STNNVVSSSKPPL DKKRARVIKK T T+WDHFTKLEDN SRCTC+YCHKEYC DTTSCGTSTLWKHLKNQCKKYPYKE
Subjt:  METSGGQHSETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYKE

Query:  VET
        VE+
Subjt:  VET
TYK08901.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]1.7e-4082.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
TYK16769.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa]1.7e-4082.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
TrEMBL top hitse value%identityAlignment
A0A5A7SRD2 Zinc finger BED domain-containing protein RICESLEEPER 2-like8.0e-4182.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
A0A5A7VIJ7 Zinc finger BED domain-containing protein RICESLEEPER 2-like8.0e-4182.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
A0A5D3C9B8 Zinc finger BED domain-containing protein RICESLEEPER 2-like8.0e-4182.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
A0A5D3CAM1 Zinc finger BED domain-containing protein RICESLEEPER 2-like8.0e-4182.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
A0A5D3D2K8 Zinc finger BED domain-containing protein RICESLEEPER 2-like8.0e-4182.86Show/hide
Query:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP
        METS GQHSETSPS SPSP PSTNN    VSSSKPPL DKK+ R  KKTT T+WDHFTKLE+NSSRCTC+YC KEYC DTTSCGTSTLWKHLKNQCKKYP
Subjt:  METSGGQHSETSPSHSPSPTPSTNN---VVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYP

Query:  YKEVE
        YKEVE
Subjt:  YKEVE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACAAGTGGTGGACAACATAGTGAAACTAGCCCTAGTCATAGTCCTAGTCCTACCCCTTCCACTAATAATGTTGTGAGTTCAAGTAAACCACCACTATCCGATAA
GAAGAGAGCTAGAGTCATTAAGAAGACAACTTTAACTCTATGGGATCACTTCACAAAGTTGGAAGATAATAGTTCTAGGTGCACATGCAGTTATTGTCATAAAGAGTATT
GTTCTGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAATGTAAGAAGTACCCATATAAAGAAGTAGAAACATGA
mRNA sequenceShow/hide mRNA sequence
TCATTGTTGGTTGTATGTTGTGATTATGTTGAGTTTCTGATTTCATTGTTGATTGTCTTGTCCTGATTCTGTTGCGTTTGTGATTTTATTGTTGATTTTGTTGCTGTGAT
TTTGTTGTGGGTGATTGGGTGATCTGACCTTAGTTTTTTATATTTTTTAGAACATGGAGACAAGTGGTGGACAACATAGTGAAACTAGCCCTAGTCATAGTCCTAGTCCT
ACCCCTTCCACTAATAATGTTGTGAGTTCAAGTAAACCACCACTATCCGATAAGAAGAGAGCTAGAGTCATTAAGAAGACAACTTTAACTCTATGGGATCACTTCACAAA
GTTGGAAGATAATAGTTCTAGGTGCACATGCAGTTATTGTCATAAAGAGTATTGTTCTGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAAT
GTAAGAAGTACCCATATAAAGAAGTAGAAACATGACAAACTATTTTGACCCTTCAACCTTCCACTAGTGGAAAAAGTGGTAGTAATTTTGTGACTACTATTTTTAGTCAA
CAATTATGTAGGGAAGCATGTGCTAAGATGATAATTGTTGATGAGTTTCCATTCAATATTTTAAGTTGTATTATGTGTGGCTATCCTGCTATGGTAGCCAATCATGCATA
TATTGGTAAAGGTAAATATATTTATAAAATAATTTTTATTTTAATCTAGCACATAATATAATATATATGCATTGTTAATTGGTTGTGTTATAGTGTTCTTTACAAGTAG
Protein sequenceShow/hide protein sequence
METSGGQHSETSPSHSPSPTPSTNNVVSSSKPPLSDKKRARVIKKTTLTLWDHFTKLEDNSSRCTCSYCHKEYCSDTTSCGTSTLWKHLKNQCKKYPYKEVET