; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G20830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G20830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionHMG-Y-related protein A-like
Genome locationChr3:16869036..16871650
RNA-Seq ExpressionCSPI03G20830
SyntenyCSPI03G20830
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016584 - nucleosome positioning (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domainsIPR000116 - High mobility group protein HMGA
IPR005818 - Linker histone H1/H5, domain H15
IPR017956 - AT hook, DNA-binding motif
IPR031059 - High mobility group protein HMGA, plant
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145857.1 HMG-Y-related protein A isoform X2 [Cucumis sativus]5.9e-94100Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_008456999.1 PREDICTED: HMG-Y-related protein A-like [Cucumis melo]1.5e-9298.33Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        LSS IS PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_022935331.1 HMG-Y-related protein A-like [Cucurbita moschata]9.5e-8489.62Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
          SV+S PKPRGRPPKDPNA   PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_031739266.1 HMG-Y-related protein A isoform X1 [Cucumis sativus]8.0e-9191.84Show/hide
Query:  MATQEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP
        MATQEVNKPPSLPPYPE                MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP
Subjt:  MATQEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP

Query:  PRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        PRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  PRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

XP_038878302.1 HMG-Y-related protein A-like [Benincasa hispida]1.1e-8490Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MAT+EVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
         SSV+S PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGK RGRPRKFP + + P+PP PSGRPRGRPPKVK +LTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

TrEMBL top hitse value%identityAlignment
A0A0A0LCH9 H15 domain-containing protein2.9e-94100Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A1S3C432 HMG-Y-related protein A-like7.1e-9398.33Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        LSS IS PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A5D3DJY3 HMG-Y-related protein A-like7.1e-9398.33Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
        LSS IS PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSA+TPAPPAPSGRPRGRPPKVKATLTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A6J1F494 HMG-Y-related protein A-like4.6e-8489.62Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
          SV+S PKPRGRPPKDPNA   PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

A0A6J1J6G8 HMG-Y-related protein A-like4.6e-8489.62Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MA +EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ
          SV+S PKPRGRPPKDPNA   PPKPPKPVQMKVSSGTGKPRGRPRKFP+ A+ PAPP PSGRPRGRPPKVK  LTEVSVQQ
Subjt:  LSSVISSPKPRGRPPKDPNA---PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ

SwissProt top hitse value%identityAlignment
P37218 Histone H11.6e-0429.35Show/hide
Query:  ATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPL
        A ++ +  P+ PPY EMI  AI  L    GS++  I+K+IE    +LP+    LL   L    AS  LV  KN+Y  + P+         P K K     
Subjt:  ATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPL

Query:  SSVISSPKPRGRPPKDPNAPPKP---------PKPVQMKVSSGTGKPRGRPR---KFPQSASTPAPPAPSGRPRGRPPKVKATL
        S   + PK   +P   P A  KP          KP      +   KP  + +   K    A+  A P  + +P+  P K KA +
Subjt:  SSVISSPKPRGRPPKDPNAPPKP---------PKPVQMKVSSGTGKPRGRPR---KFPQSASTPAPPAPSGRPRGRPPKVKATL

Q00423 HMG-Y-related protein A9.3e-5867.22Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP
        MAT+EVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HLN MK SG+L F +NNYMK DP APP+RGRGRPPK K+PLP
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLP

Query:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPA-PSGRPRGRPPKVKATLTEVSVQ
          +V+S P+PRGRPPKDPNAPPK PK    K + G+G+PRGRP+K P+S +  AP A  SGRPRGRPPKVK  LTEVSV+
Subjt:  LSSVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPA-PSGRPRGRPPKVKATLTEVSVQ

Q10370 HMG-Y-related protein B (Fragment)1.2e-4464.74Show/hide
Query:  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKP
        ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP APP+RGRGRPPK K PLP  +V+S P+PRGRPPKDPNAPPK 
Subjt:  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNAPPKP

Query:  PKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPS-GRPRGRPPKVKATLTEVSVQ
        PK    K +  TG+PRGRP+K  +S + P+P A S GRPRGRPPKVK  LTEVSV+
Subjt:  PKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPS-GRPRGRPPKVKATLTEVSVQ

Q43386 HMG-Y-related protein A1.5e-3652.49Show/hide
Query:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPL
        SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+  KNNYMK DP APP+RGRGRPPK K         + +  
Subjt:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPL

Query:  SSVISS--PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKATL
        ++V+S+  P+ RGRPPK    P  P +P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T+
Subjt:  SSVISS--PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKATL

Q9FYS5 HMG-Y-related protein A2.5e-3451.08Show/hide
Query:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPL
        MAT E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL  MK SG+LVF KNNY +   P APP+RGRGRPPK++ P 
Subjt:  MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPKSKSPL

Query:  PLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ASTPAP---PAPSG-------RPRGRPPKVK
          +    SP   GR       PPK   P++  V   ++G  KPRGRP K  ++  A++P+P   PAP+G       R RGRPPKV+
Subjt:  PLSSVISSPKPRGRPPKDPNAPPKPPKPVQMKV---SSGTGKPRGRPRKFPQS--ASTPAP---PAPSG-------RPRGRPPKVK

Arabidopsis top hitse value%identityAlignment
AT1G14900.1 high mobility group A1.1e-3752.49Show/hide
Query:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPL
        SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+  KNNYMK DP APP+RGRGRPPK K         + +  
Subjt:  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSK---------SPLPL

Query:  SSVISS--PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKATL
        ++V+S+  P+ RGRPPK    P  P +P Q KV +G+G+PRGRP K P++ S T A P P+       R RGRPPKVK T+
Subjt:  SSVISS--PKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSAS-TPAPPAPSG------RPRGRPPKVKATL

AT1G48620.1 high mobility group A53.4e-1535.29Show/hide
Query:  TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY-MKRDPTAPP--------------
        T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL  +K SG LV  K +Y +   P  PP              
Subjt:  TQEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY-MKRDPTAPP--------------

Query:  ----------------------RRGRGRPPKSK----SPLPLS----SVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP
                              +RGRGRPPK+K     P PL+    +   S  P  RP +    PP+ P   Q  V     +P GRPRK   S +    
Subjt:  ----------------------RRGRGRPPKSK----SPLPLS----SVISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAP

Query:  PAPSG-----RPRGRPPKVKA
         + SG     + RGRPP  +A
Subjt:  PAPSG-----RPRGRPPKVKA

AT3G18035.1 winged-helix DNA-binding transcription factor family protein3.6e-1233.17Show/hide
Query:  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY---------------------------------MKR
        PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   K +Y                                    
Subjt:  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNY---------------------------------MKR

Query:  DPTA------PPRRGRGRPPKSK---SPLPLSSV--ISSPKPRGRP---PKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSG--RPR
        DP A      P +RGRGRPPK K    P PL  +   +  +  G+P    +   +P   P PV      G G+PR      P +A        +G  + R
Subjt:  DPTA------PPRRGRGRPPKSK---SPLPLSSV--ISSPKPRGRP---PKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSG--RPR

Query:  GRPPKVKA
        GRPP  +A
Subjt:  GRPPKVKA

AT5G08780.1 winged-helix DNA-binding transcription factor family protein3.1e-0838.57Show/hide
Query:  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNN
        +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +    +++   NN
Subjt:  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATGGCTCAAACAAGTCCACCAT
ATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGGGACCTTGTGTTTTGGAAGA
ACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGTGATATCCTCACCAAAGCCA
AGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGAAGACCAAGGAAATTCCC
CCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGTGTTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
GAAAAAAGAAAATTAAATTAAAAAAAAAAAAAGAAAAAAAGAAAGGGGAAGAACAGAAATTACTCAAAATCCCCTGTTTGCAAATCTGTGCTCAAATCAAACAGTTAACA
GAGCATTTTTTTTTTTTTTTGAACAGCAGTAGTAGGTTCCTCTTTCTATCTCTAGCTGCTTTCCGGGTTACTCTTCCCCTTCTCTGTAGGCTTCAGGATAATAAAAAACC
TTTCTTTTTTCAATTTTCAATGGCGACTCAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCGTTGAATAGTGACAATG
GCTCAAACAAGTCCACCATATCAAAATACATTGAATCGACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCGAGTGGG
GACCTTGTGTTTTGGAAGAACAACTACATGAAGAGGGATCCTACGGCACCACCCCGACGAGGCCGAGGCAGGCCTCCCAAATCGAAGAGCCCTCTTCCACTCAGTTCTGT
GATATCCTCACCAAAGCCAAGAGGGCGACCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAG
GAAGACCAAGGAAATTCCCCCAGTCAGCATCCACGCCAGCTCCTCCGGCACCAAGTGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAGGCTACATTGACTGAAGTTAGT
GTTCAACAATAGATTGTTGCAGTGCAGTTAATTGGTAGTGCCTTGACTCTCTCTCTCACTCTCTCACTCTCTTATTTGTCTCTGTTGCTGTGTGGGCAGTTTGTAGTTGT
AGTGCTTAGTTTTAGTTTGATGTGGATGTGGGTGTAATTCATGTAAAATGTGGTGTAGTGGTTTGTGAGGCTCTGTTGCTTTCTAATTTACAAAGTGAACATTGACCTGT
GCTAATCATAATTTCTTCGGTGTTTCAATCCTTCAAACATTTTTCATTGCTTCAAAGATGACACATCACATTGTCTACTCTTTTTCCAAATGTTGTAAGGTGAAGCAACT
GAACCAGTTCAGGTGTGCATAAATAGTTGTTATGACTACTCATGGACAGAAATAAAAGGGACCTTCAAAAGTCAGAACAAGAAGAGACAAAAGTCGATTGGTTGTGTGTT
GAATTATTTTTGTCAACGGAAACAAGTTGTTGGAATCGTACTAGTTGTACTTTTGAAGAGGATGTGGATTTTAGACTCGTCCAAATAGTAAATGAGTTTAGATCTCATTT
AACAGTTCTATTTTGATGAGGTTTTAATTGGATAGATAGGGGTTCATAGGACCATAGAAGATTTTGAAGGATAAAATAGAATTTGAGGTCTCTATGCCAACAAGTAAGTA
GTGACAGTGTGATTCGGAATGTGAAGTCAAATGGGGATTTGGCCCACTTTGATGGGTTGTATTGAATGATCGGATTTTATAAAATTAGAGAATGGTTGAGATTCAGTGAG
GATTCTGCTTTTGAATGTCTTGGAGATTTTCATCACACTGCTTTATGCTTCAGTGCTTCTGTTCTACTTCTGACTTGTGAGGATCCAAACCATTACTATTTTTCTAAAGT
ATGGGACCAGACAACATTAGGAATGTGAAATTGGAATTGTAAATTAAAGTCACACA
Protein sequenceShow/hide protein sequence
MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKP
RGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ