; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G20870 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G20870
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionValyl-tRNA synthetase
Genome locationChr3:16924843..16927355
RNA-Seq ExpressionCSPI03G20870
SyntenyCSPI03G20870
Gene Ontology termsGO:0006438 - valyl-tRNA aminoacylation (biological process)
GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
GO:0004823 - leucine-tRNA ligase activity (molecular function)
GO:0004832 - valine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002303 - Valine-tRNA ligase
IPR010978 - Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm
IPR019499 - Valyl-tRNA synthetase, tRNA-binding arm
IPR037118 - Valyl-tRNA synthetase, tRNA-binding arm superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011651387.1 valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis sativus]1.8e-6092.03Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

XP_011651390.1 valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucumis sativus]1.8e-6092.03Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

XP_022935323.1 valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucurbita moschata]1.4e-5787.68Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFAN+PPGNVDQSVHLVAGEGLEAYLPLADMVDISAE+QRLSKRLTKMK EYDGFIARL+SPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKA+EAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

XP_022983417.1 valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita maxima]1.4e-5787.68Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFAN+PPGNVDQSVHLVAGEGLEAYLPLADMVDISAE+QRLSKRLTKMK EYDGFIARL+SPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKA+EAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

XP_038883468.1 valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Benincasa hispida]1.4e-5788.41Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMK EYDGF+ARL+S SFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKAEEAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

TrEMBL top hitse value%identityAlignment
A0A0A0L9W5 Val_tRNA-synt_C domain-containing protein5.9e-73100Show/hide
Query:  MENKSRKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARL
        MENKSRKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARL
Subjt:  MENKSRKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARL

Query:  SSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        SSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
Subjt:  SSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

A0A6J1F580 Valyl-tRNA synthetase7.0e-5887.68Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFAN+PPGNVDQSVHLVAGEGLEAYLPLADMVDISAE+QRLSKRLTKMK EYDGFIARL+SPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKA+EAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

A0A6J1FA83 Valyl-tRNA synthetase7.0e-5887.68Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFAN+PPGNVDQSVHLVAGEGLEAYLPLADMVDISAE+QRLSKRLTKMK EYDGFIARL+SPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKA+EAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

A0A6J1IZ88 Valyl-tRNA synthetase7.0e-5887.68Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFAN+PPGNVDQSVHLVAGEGLEAYLPLADMVDISAE+QRLSKRLTKMK EYDGFIARL+SPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKA+EAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

A0A6J1J7Q1 Valyl-tRNA synthetase7.0e-5887.68Show/hide
Query:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA
        S+    +E +N  I EEKEVLALLTRLDLHNVHFAN+PPGNVDQSVHLVAGEGLEAYLPLADMVDISAE+QRLSKRLTKMK EYDGFIARL+SPSFVEKA
Subjt:  SSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKA

Query:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC
        PEDIVRGVREKA+EAKEKIALTEKRLSLL STVPVPDC
Subjt:  PEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVPDC

SwissProt top hitse value%identityAlignment
F4KE63 Valine--tRNA ligase, chloroplastic/mitochondrial 25.7e-4165.44Show/hide
Query:  RKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSF
        ++I +S    AE +   I +EKEVLALL+RLDL+NVHF+N+PPG+ + SVHLVA EGLEAYLPLA MVDIS+EVQR+SKRL+KM+ EYD  I RLSSP F
Subjt:  RKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSF

Query:  VEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGST
        VEKAPE++VRGV+E+ EE +EKI LT+ RL  L ST
Subjt:  VEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGST

Q5NHZ4 Valine--tRNA ligase6.2e-1140.2Show/hide
Query:  LHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSL
        ++N+ F ++PP ++ Q V     EGLE  +PLA +VDI AE  RL K L K+K E D    +LS+  FV  APE +V   +EK  + +E  A T ++   
Subjt:  LHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSL

Query:  LG
        LG
Subjt:  LG

Q891R5 Valine--tRNA ligase1.7e-0835.71Show/hide
Query:  VHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLL
        V F NS     + +V  V  +G E Y+PL D+VD+  E++RL+K   K++ E +    +LS+ +FV+KAPE +V   + K E+ KE +    +R+  L
Subjt:  VHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLL

Q97GG8 Valine--tRNA ligase6.8e-1035.35Show/hide
Query:  NVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLL
        +V F  S     + +V  V  +G E ++PL D++D++ E++RLSK   K+K E      +LS+  FV+KAPE +V   R K E+ K+ +   E+R++ L
Subjt:  NVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLL

Q9X2D7 Valine--tRNA ligase9.8e-0933.04Show/hide
Query:  VEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEE
        V E+E L L T  ++  V F N  P    ++      E +EAY+ L  ++D   E +RL + + K++ E D    +L++  FVEKAPE++V   +EK   
Subjt:  VEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEE

Query:  AKEKIALTEKRL
         +E++A  E  L
Subjt:  AKEKIALTEKRL

Arabidopsis top hitse value%identityAlignment
AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases4.1e-4265.44Show/hide
Query:  RKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSF
        ++I +S    AE +   I +EKEVLALL+RLDL+NVHF+N+PPG+ + SVHLVA EGLEAYLPLA MVDIS+EVQR+SKRL+KM+ EYD  I RLSSP F
Subjt:  RKIQSSKSTHAEFLNLQIVEEKEVLALLTRLDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSF

Query:  VEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGST
        VEKAPE++VRGV+E+ EE +EKI LT+ RL  L ST
Subjt:  VEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAACCTGGGAGACTTATGAAGATTTGTAGCAATGTTTTCCAGAATTTCACCTTGAATTTGGAGGAGTGTAATGATAGACCCCCTATCATACACCAATATAAGAA
GCGTTTCTGTTCTACCTTGAGAGATAGGTTAGCAGAAGGGAGTTCTTACATCCTTGAGATCGGATTAGAGATTTTCCTGGTTTCCATCAGCTCACCACCAGACCGTGGGT
GGGTAATGGAAAATAAATCTCGTAAAATTCAATCTTCTAAATCAACCCATGCAGAATTTCTGAATCTTCAAATTGTGGAAGAGAAGGAAGTTTTAGCTCTTCTTACTCGA
CTGGATCTACATAATGTCCATTTTGCAAATTCTCCTCCAGGAAATGTAGATCAGTCGGTGCACCTCGTTGCTGGTGAAGGGCTAGAGGCTTATCTACCTCTTGCTGATAT
GGTTGATATTTCTGCCGAAGTCCAACGCTTATCGAAGCGCCTTACAAAAATGAAAATAGAGTATGATGGATTTATAGCTCGGCTCAGTTCTCCAAGTTTTGTAGAGAAAG
CTCCCGAGGACATCGTCCGTGGTGTAAGAGAAAAGGCTGAAGAAGCGAAAGAGAAGATAGCTCTCACCGAGAAGCGCCTTTCTCTCCTTGGATCAACTGTTCCAGTTCCT
GATTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAACCTGGGAGACTTATGAAGATTTGTAGCAATGTTTTCCAGAATTTCACCTTGAATTTGGAGGAGTGTAATGATAGACCCCCTATCATACACCAATATAAGAA
GCGTTTCTGTTCTACCTTGAGAGATAGGTTAGCAGAAGGGAGTTCTTACATCCTTGAGATCGGATTAGAGATTTTCCTGGTTTCCATCAGCTCACCACCAGACCGTGGGT
GGGTAATGGAAAATAAATCTCGTAAAATTCAATCTTCTAAATCAACCCATGCAGAATTTCTGAATCTTCAAATTGTGGAAGAGAAGGAAGTTTTAGCTCTTCTTACTCGA
CTGGATCTACATAATGTCCATTTTGCAAATTCTCCTCCAGGAAATGTAGATCAGTCGGTGCACCTCGTTGCTGGTGAAGGGCTAGAGGCTTATCTACCTCTTGCTGATAT
GGTTGATATTTCTGCCGAAGTCCAACGCTTATCGAAGCGCCTTACAAAAATGAAAATAGAGTATGATGGATTTATAGCTCGGCTCAGTTCTCCAAGTTTTGTAGAGAAAG
CTCCCGAGGACATCGTCCGTGGTGTAAGAGAAAAGGCTGAAGAAGCGAAAGAGAAGATAGCTCTCACCGAGAAGCGCCTTTCTCTCCTTGGATCAACTGTTCCAGTTCCT
GATTGTTGACCATCACCAAAAATTGGTTCCAGTTGTATGTAAACTGTTCAATTATCAAAGAAGTAACAAGCAATTGATTGAGGCCAATTTATGCGAGGCTTTCTCGAGTT
GTAAGAGCTCCATTTTTCTGGTGAATTAACATGCCCCTCCATCCCATTGAGTTTGTTCAGTAAAGGCTGAGCAACCCTCAGGCTAACCCCAGAAATAGAGGCTGAGTTGA
ATCATACCAAATAGTTAAAAACTTGAAATCAACTCTTTCTTTATGTTAGTTTATAGCCTAGGAAATAGTTTTTTAAAAACGATTCTTCACTTCGTTGATTTTATTATTTT
TCCATTTGAATATTAACTTGTAATATGTATTTTTAGCCTTCCGCTGATTCTTTTTGCCATTTGTAGTCGTATGTGGTGGAGATGAAGCTGAGTGTCATCATCAATGTAGG
CTTTCCATTATAAAGAAACAAGTATCCATGAACTACTTGATGTAAATGAGTTAATTCTAAGATTTGACATCCAACTTATTACTTATCCAGGTAAATTTATAAC
Protein sequenceShow/hide protein sequence
MKQPGRLMKICSNVFQNFTLNLEECNDRPPIIHQYKKRFCSTLRDRLAEGSSYILEIGLEIFLVSISSPPDRGWVMENKSRKIQSSKSTHAEFLNLQIVEEKEVLALLTR
LDLHNVHFANSPPGNVDQSVHLVAGEGLEAYLPLADMVDISAEVQRLSKRLTKMKIEYDGFIARLSSPSFVEKAPEDIVRGVREKAEEAKEKIALTEKRLSLLGSTVPVP
DC