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CSPI03G21000 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G21000
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationChr3:17103937..17104328
RNA-Seq ExpressionCSPI03G21000
SyntenyCSPI03G21000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-3162.79Show/hide
Query:  KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDE-NEQINTEIANLSLHSLESRS-----------------CRVDGGATHNFIS
        KEKGLCFRCDEKFS  HRCKR ELNII +QE EDLS E D+V +E E + NE++N EIANLSL+SL   S                   +DGGATHNFI 
Subjt:  KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDE-NEQINTEIANLSLHSLESRS-----------------CRVDGGATHNFIS

Query:  EEVVKELKIPIETLDAYGVVLGTGGVVRA
        +EVVKELKI IETLDAYG+VLGT G+VRA
Subjt:  EEVVKELKIPIETLDAYGVVLGTGGVVRA

KAE8647113.1 hypothetical protein Csa_021721 [Cucumis sativus]5.8e-1872.06Show/hide
Query:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEIANLSLHSL
        +KKEKGLCFRCDEKFSLGHRCKRRELNIIV+QEGEDLS + D+V +E E + N+++NT+I NLS++SL
Subjt:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEIANLSLHSL

KAE8650876.1 hypothetical protein Csa_002497, partial [Cucumis sativus]1.8e-3565.91Show/hide
Query:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEIANLSLHSL----ESRSCR-------------VDGGATHNF
        +KKEKG CFRCD+KFS  HRCKRRELNIIV+QEGEDLS E D+V +E E + N++INTEIANLSL+SL     S++ +             +DGGATHNF
Subjt:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEIANLSLHSL----ESRSCR-------------VDGGATHNF

Query:  ISEEVVKELKIPIETLDAYGVVLGTGGVVRAT
        I+EEVVKELKI +ET+DAYGVVLGTGGVVRAT
Subjt:  ISEEVVKELKIPIETLDAYGVVLGTGGVVRAT

KAF8398742.1 hypothetical protein HHK36_014600 [Tetracentron sinense]1.4e-1641.09Show/hide
Query:  KKEKGLCFRCDEKFSLGHRCKRRELNIIV---IQEGEDLSGEIDKVAK-ETEDENEQINTEIANLSLHSL--------------ESRSCRVDGGATHNFI
        K++KGLC+RCD+K++ GHRCK++ELN+++   + EGE  +GE++++ + + E E  +I T++  +SL+S+              +     +D GATHNFI
Subjt:  KKEKGLCFRCDEKFSLGHRCKRRELNIIV---IQEGEDLSGEIDKVAK-ETEDENEQINTEIANLSLHSL--------------ESRSCRVDGGATHNFI

Query:  SEEVVKELKIPIETLDAYGVVLGTGGVVR
        S E+VK L++PI  ++AYGV +GTG  VR
Subjt:  SEEVVKELKIPIETLDAYGVVLGTGGVVR

XP_031737572.1 uncharacterized protein LOC116402461 [Cucumis sativus]1.8e-3565.91Show/hide
Query:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEIANLSLHSL----ESRSCR-------------VDGGATHNF
        +KKEKG CFRCD+KFS  HRCKRRELNIIV+QEGEDLS E D+V +E E + N++INTEIANLSL+SL     S++ +             +DGGATHNF
Subjt:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEIANLSLHSL----ESRSCR-------------VDGGATHNF

Query:  ISEEVVKELKIPIETLDAYGVVLGTGGVVRAT
        I+EEVVKELKI +ET+DAYGVVLGTGGVVRAT
Subjt:  ISEEVVKELKIPIETLDAYGVVLGTGGVVRAT

TrEMBL top hitse value%identityAlignment
A0A067D9Z8 Uncharacterized protein (Fragment)8.4e-1538.93Show/hide
Query:  KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEIANLSLHSL-------------ESRSCRV----DGGATHNF
        +E GLC++CDEKFS GHRC+++EL ++++QE E  +  ++ V +E E E+   E    ++  +SL+S+             E  + +V    D GA+HNF
Subjt:  KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEIANLSLHSL-------------ESRSCRV----DGGATHNF

Query:  ISEEVVKELKIPIETLDAYGVVLGTGGVVRA
        IS EVV  LK+PI   + YGV+L TG   +A
Subjt:  ISEEVVKELKIPIETLDAYGVVLGTGGVVRA

A0A5C7IJS7 Uncharacterized protein3.2e-1438.35Show/hide
Query:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVI--QEGEDLSGEIDKVAKETEDENEQIN--TEIANLSLHSLESRSC-----------------RVDGGAT
        +K+  GLC+RCDEK+S GH+CK++ELN+++   +E E+   E   +  E   E  +I+  TE   +SL+S+   +                   +D GAT
Subjt:  MKKEKGLCFRCDEKFSLGHRCKRRELNIIVI--QEGEDLSGEIDKVAKETEDENEQIN--TEIANLSLHSLESRSC-----------------RVDGGAT

Query:  HNFISEEVVKELKIPIETLDAYGVVLGTGGVVR
        HNFIS ++V++LK+PI   +AYGV +GTG  VR
Subjt:  HNFISEEVVKELKIPIETLDAYGVVLGTGGVVR

A0A5D3CA10 Ty3/gypsy retrotransposon protein4.2e-1436.57Show/hide
Query:  KKEKGLCFRCDEKFSLGHRCK---RRELNIIVIQEGEDLSGEIDKVAKETEDENEQIN---TEIANLSLHSL-----------------ESRSCRVDGGA
        +KEKGLCFRC+EK+S  HRC+   +REL + V+ EG+D    +++  +E +    ++N   T +  LS++S+                 E     +D GA
Subjt:  KKEKGLCFRCDEKFSLGHRCK---RRELNIIVIQEGEDLSGEIDKVAKETEDENEQIN---TEIANLSLHSL-----------------ESRSCRVDGGA

Query:  THNFISEEVVKELKIPIETLDAYGVVLGTGGVVR
        THNF+SE++VK+L +P++    YGV+LG+G  V+
Subjt:  THNFISEEVVKELKIPIETLDAYGVVLGTGGVVR

A0A5D3CTU6 Ty3-gypsy retrotransposon protein1.3e-3162.79Show/hide
Query:  KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDE-NEQINTEIANLSLHSLESRS-----------------CRVDGGATHNFIS
        KEKGLCFRCDEKFS  HRCKR ELNII +QE EDLS E D+V +E E + NE++N EIANLSL+SL   S                   +DGGATHNFI 
Subjt:  KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDE-NEQINTEIANLSLHSLESRS-----------------CRVDGGATHNFIS

Query:  EEVVKELKIPIETLDAYGVVLGTGGVVRA
        +EVVKELKI IETLDAYG+VLGT G+VRA
Subjt:  EEVVKELKIPIETLDAYGVVLGTGGVVRA

A0A6J1DN22 Reverse transcriptase2.2e-1536.72Show/hide
Query:  KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIANLSLHSLESRS-----------------CRVDGGATHNFIS
        +K+KGLCFR +EK+S+GHRCK +EL + V+ + E +  + +++   TE     I  E+A L+L+++   S                   +D GATHNFIS
Subjt:  KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIANLSLHSLESRS-----------------CRVDGGATHNFIS

Query:  EEVVKELKIPIETLDAYGVVLGTGGVVR
        +++V    +P+     YGV++GTG VVR
Subjt:  EEVVKELKIPIETLDAYGVVLGTGGVVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTT
AAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTG
TCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTA
GTTCGAGCAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTT
AAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTG
TCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTA
GTTCGAGCAACATGA
Protein sequenceShow/hide protein sequence
MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIANLSLHSLESRSCRVDGGATHNFISEEVVKELKIPIETLDAYGVVLGTGGV
VRAT