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CSPI03G21230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G21230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr3:17377175..17379894
RNA-Seq ExpressionCSPI03G21230
SyntenyCSPI03G21230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650595.1 hypothetical protein Csa_010416, partial [Cucumis sativus]5.5e-19100Show/hide
Query:  IPFHELPSSAPWADSSHTHDSRSSITLPSFPFKLVVIHTASSSVNLIGPD
        IPFHELPSSAPWADSSHTHDSRSSITLPSFPFKLVVIHTASSSVNLIGPD
Subjt:  IPFHELPSSAPWADSSHTHDSRSSITLPSFPFKLVVIHTASSSVNLIGPD
TrEMBL top hitse value%identityAlignment
A0A5A7VAV1 Retrotrans_gag domain-containing protein9.3e-0459.46Show/hide
Query:  MTFEPTGDSVDIEKCFGVMGCSQERRVNLATFLLKGS
        MTFE T ++ D+EK FGV+GC +ER+V LATF L+G+
Subjt:  MTFEPTGDSVDIEKCFGVMGCSQERRVNLATFLLKGS
A0A5D3CYI7 Retrotrans_gag domain-containing protein9.3e-0459.46Show/hide
Query:  MTFEPTGDSVDIEKCFGVMGCSQERRVNLATFLLKGS
        MTFE T ++ D+EK FGV+GC +ER+V LATF L+G+
Subjt:  MTFEPTGDSVDIEKCFGVMGCSQERRVNLATFLLKGS
A0A5D3DTR7 Uncharacterized protein7.1e-0458.33Show/hide
Query:  MTFEPTGDSVD-------IEKCFGVMGCSQERRVNLATFLLKGSTGGY
        MTF+ T DS D       IEKCFGVM CS+E +V LATFLL+GS   Y
Subjt:  MTFEPTGDSVD-------IEKCFGVMGCSQERRVNLATFLLKGSTGGY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTCGAACCAACTGGGGATTCAGTTGACATAGAGAAGTGCTTTGGAGTAATGGGTTGTTCTCAAGAAAGAAGAGTTAACTTGGCCACGTTCTTGCTGAAAGGAAG
CACTGGTGGTTATGTGTGGAAGGGGTGCACAAAGGGGATGACTTGCGACCAAGCTTGGAGTAGCCATGGTGGGTGTGTAACTGAGAAAGCGAGGTTAGCAAGCGGTCTAA
CACCTCTACAAGGCCATTGTGTGCCCATTCCCTTTCATGAGCTACCTTCTTCTGCTCCATGGGCTGACTCTAGCCACACGCACGACAGTCGAAGCTCGATCACACTACCT
TCTTTCCCATTCAAGCTCGTGGTTATTCACACTGCTTCGTCCTCTGTCAATCTCATCGGACCTGATTATTACAATGCCCCTTTGATCATAGAAGGTTGTCAAGAAGATGG
TGAAGAAGATGGTGAAGAAGATGACAATAGAGGAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTCGAACCAACTGGGGATTCAGTTGACATAGAGAAGTGCTTTGGAGTAATGGGTTGTTCTCAAGAAAGAAGAGTTAACTTGGCCACGTTCTTGCTGAAAGGAAG
CACTGGTGGTTATGTGTGGAAGGGGTGCACAAAGGGGATGACTTGCGACCAAGCTTGGAGTAGCCATGGTGGGTGTGTAACTGAGAAAGCGAGGTTAGCAAGCGGTCTAA
CACCTCTACAAGGCCATTGTGTGCCCATTCCCTTTCATGAGCTACCTTCTTCTGCTCCATGGGCTGACTCTAGCCACACGCACGACAGTCGAAGCTCGATCACACTACCT
TCTTTCCCATTCAAGCTCGTGGTTATTCACACTGCTTCGTCCTCTGTCAATCTCATCGGACCTGATTATTACAATGCCCCTTTGATCATAGAAGGTTGTCAAGAAGATGG
TGAAGAAGATGGTGAAGAAGATGACAATAGAGGAATTTAG
Protein sequenceShow/hide protein sequence
MTFEPTGDSVDIEKCFGVMGCSQERRVNLATFLLKGSTGGYVWKGCTKGMTCDQAWSSHGGCVTEKARLASGLTPLQGHCVPIPFHELPSSAPWADSSHTHDSRSSITLP
SFPFKLVVIHTASSSVNLIGPDYYNAPLIIEGCQEDGEEDGEEDDNRGI