; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G21260 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G21260
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L34
Genome locationChr3:17454368..17454732
RNA-Seq ExpressionCSPI03G21260
SyntenyCSPI03G21260
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR008195 - Ribosomal protein L34Ae


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1220395.1 60S ribosomal protein L34 [Morella rubra]1.0e-0555.38Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKT-------------------PVRERIIRAFLVEGQKIVKRI
        MVQRLTYRKRH+Y TKSNQH VVKT                     RERIIRA L E QKIVK++
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKT-------------------PVRERIIRAFLVEGQKIVKRI

KAE8023266.1 hypothetical protein FH972_008985 [Carpinus fangiana]6.7e-0543.9Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------VRERIIRAFLVEGQKIVKRI
        MVQRLTYR RH+YATKSNQH +VKTP                                     R RI+RAFLVE QKIVK++
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------VRERIIRAFLVEGQKIVKRI

KAE8649432.1 hypothetical protein Csa_021679 [Cucumis sativus]1.0e-08100Show/hide
Query:  VRERIIRAFLVEGQKIVKRIEDSEGEGKAGIKELN
        VRERIIRAFLVEGQKIVKRIEDSEGEGKAGIKELN
Subjt:  VRERIIRAFLVEGQKIVKRIEDSEGEGKAGIKELN

KAG6753304.1 hypothetical protein POTOM_043356 [Populus tomentosa]5.1e-0544.05Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTPVRERIIRAFL---------VEGQKI---------------VKRIEDSEGEGKAGIKEL
        MVQRLTYRKRH+YATKSNQH VV+TP  + + +            V G+KI                +  EDSEG+GK  +KEL
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTPVRERIIRAFL---------VEGQKI---------------VKRIEDSEGEGKAGIKEL

RWW23978.1 hypothetical protein GW17_00011752 [Ensete ventricosum]3.9e-0552.94Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTPVRER----------------------IIRAFLVEGQKIVKRI
        MVQRLTYRKRH YATKSNQ  VVKTP ++                       IIRAFLVE QKIVK++
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTPVRER----------------------IIRAFLVEGQKIVKRI

TrEMBL top hitse value%identityAlignment
A0A0A0L9Z1 Uncharacterized protein1.1e-05100Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP
        MVQRLTYRKRHNYATKSNQHCVVKTP
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP

A0A0D9X883 Uncharacterized protein1.0e-1186.96Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTPVRERIIRAFLVEGQKIVKRI
        MVQRLTYRKRH+YATKSNQ  VVKTPVRERIIRAFLVE QKIVK++
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTPVRERIIRAFLVEGQKIVKRI

A0A6A1W5J7 60S ribosomal protein L345.0e-0655.38Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKT-------------------PVRERIIRAFLVEGQKIVKRI
        MVQRLTYRKRH+Y TKSNQH VVKT                     RERIIRA L E QKIVK++
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKT-------------------PVRERIIRAFLVEGQKIVKRI

A0A7C9CL03 Uncharacterized protein5.0e-0639.62Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRLTYRKRH+YATKSNQHCVVKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

A0A7C9CMX9 Uncharacterized protein5.0e-0639.62Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRLTYRKRH+YATKSNQHCVVKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

SwissProt top hitse value%identityAlignment
P40590 60S ribosomal protein L347.4e-0737.74Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRLTYR+RH+YATKSNQH VVKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

P41098 60S ribosomal protein L343.3e-0738.68Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRLTYRKRH+YATKSNQH VVKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

Q42351 60S ribosomal protein L34-16.3e-0635.85Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRL YR RH+YATKSNQH +VKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

Q9FE65 60S ribosomal protein L34-26.3e-0635.85Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRL YR RH+YATKSNQH +VKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

Q9LJW6 60S ribosomal protein L34-38.2e-0634.91Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRL YR RH+YATKSNQH +VKTP                                                            VRERI+RAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

Arabidopsis top hitse value%identityAlignment
AT1G26880.1 Ribosomal protein L34e superfamily protein4.5e-0735.85Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRL YR RH+YATKSNQH +VKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

AT1G26880.2 Ribosomal protein L34e superfamily protein3.8e-0680.77Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP
        MVQRL YR RH+YATKSNQH +VKTP
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP

AT1G69620.1 ribosomal protein L344.5e-0735.85Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRL YR RH+YATKSNQH +VKTP                                                            VRERIIRAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI

AT3G28900.1 Ribosomal protein L34e superfamily protein5.9e-0734.91Show/hide
Query:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ
        MVQRL YR RH+YATKSNQH +VKTP                                                            VRERI+RAFLVE Q
Subjt:  MVQRLTYRKRHNYATKSNQHCVVKTP------------------------------------------------------------VRERIIRAFLVEGQ

Query:  KIVKRI
        KIVK++
Subjt:  KIVKRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGTGAGGGAGAGGATTATTCGAGCCTTTTTGGT
TGAAGGGCAGAAGATTGTGAAGCGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAACTAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAGCGTCTTACATACCGCAAGCGCCATAACTATGCTACCAAGTCTAACCAGCACTGTGTCGTTAAAACCCCTGTGAGGGAGAGGATTATTCGAGCCTTTTTGGT
TGAAGGGCAGAAGATTGTGAAGCGTATTGAAGATTCAGAAGGCGAAGGAAAAGCTGGCATCAAAGAACTAAATTAA
Protein sequenceShow/hide protein sequence
MVQRLTYRKRHNYATKSNQHCVVKTPVRERIIRAFLVEGQKIVKRIEDSEGEGKAGIKELN