CuGenDBv2

Gene ID	CSPI03G21340
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Genome location	Chr3:17572464..17573128
RNA-Seq Expression	CSPI03G21340
Synteny	CSPI03G21340
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0042223.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

4.3e-77

70.67

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Query:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

KAA0043346.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.3e-76

70.67

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Query:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC+ILQANVLLEKF P W DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

KAA0051006.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

5.7e-77

70.67

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Query:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

5.7e-77

70.67

Show/hide

Query:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

TYK26791.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

4.3e-77

70.67

Show/hide

Query:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TG73 Ty1-copia retrotransposon protein

2.1e-77

70.67

Show/hide

Query:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

A0A5A7TMS2 Ty1-copia retrotransposon protein

6.1e-77

70.67

Show/hide

Query:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC+ILQANVLLEKF P W DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

A0A5A7U9X9 Ty1-copia retrotransposon protein

2.7e-77

70.67

Show/hide

Query:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

A0A5D3BZI1 Ty1-copia retrotransposon protein

2.7e-77

70.67

Show/hide

Query:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK  +K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  V  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIK--SKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP++EQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

A0A5D3DSQ3 Ty1-copia retrotransposon protein

2.1e-77

70.67

Show/hide

Query:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR
        MSIK+  K+LPDLSKLEPLDGTNYRRWSQKL IFFEQLEVDYVL    P     PP      SDP+SSTG +  +  TDQVK+   IDP+KY KDNK VR
Subjt:  MSIKS--KVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSI--VVTTDQVKEASTIDPKKYKKDNKIVR

Query:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ
        GHLLNHM DP                   SRYG DDA RKKYVV KWLQFQM DDKP+VEQIHEYENLVANVLSEGMKMC+ILQANVLLEKF PSW DY+
Subjt:  GHLLNHMLDP-------------------SRYGEDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQ

Query:  NYLKHKKKDLKLQDLISHMRTEEAN
        N+LKHKKKDLKLQ+LISHMRTEEAN
Subjt:  NYLKHKKKDLKLQDLISHMRTEEAN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

7.3e-14

23.81

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Query:  KLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSIVVTTDQVKEASTIDP--KKYKKDNKIVRGHLLNHMLDP--SR
        K+   DG +Y  W+ ++ +F +QL++ YVL                  S+P  S GS        +E +  D   KK+ +D+ +   HL+N + D    R
Subjt:  KLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSIVVTTDQVKEASTIDP--KKYKKDNKIVRGHLLNHMLDP--SR

Query:  YGE------------------DDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQ
        Y +                  D+++ K+  V K+++F+M++++PI+EQ+  +  +  +++S GM + +    + ++ KF PSW  +   L  +++ L + 
Subjt:  YGE------------------DDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQ

Query:  DLISHMRTEE
         L+  ++ EE
Subjt:  DLISHMRTEE

Sequences

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CDS sequence

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ATGTCAATCAAAAGCAAAGTTCTACCTGACTTGTCTAAACTGGAGCCACTCGACGGAACAAACTACCGCCGCTGGTCCCAGAAGTTATCGATCTTTTTCGAACAACTTGA
AGTCGATTATGTTCTCATCGTCAAACCGCCAATCGATCCTCTAGCACCACCAATCAATCTTCCAGCACCTTCTGATCCAAAATCTTCCACGGGATCCATTGTCGTCACTA
CTGACCAGGTAAAGGAAGCATCTACAATTGATCCCAAGAAGTACAAGAAGGACAACAAGATTGTTCGTGGGCATCTGTTGAACCATATGTTGGATCCCTCTCGCTATGGT
GAAGACGACGCAGAGAGAAAGAAGTACGTTGTGGAAAAATGGCTGCAATTTCAAATGATAGATGATAAGCCAATTGTGGAGCAGATACATGAGTATGAAAACCTTGTGGC
CAATGTCCTATCTGAAGGTATGAAGATGTGTAAGATACTTCAAGCAAATGTTTTACTGGAAAAATTTTCACCCTCTTGGACCGACTACCAAAATTACTTGAAGCACAAGA
AGAAAGATCTGAAACTCCAAGATCTTATAAGCCACATGCGTACAGAAGAGGCCAACTGA

mRNA sequence

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Protein sequence

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MSIKSKVLPDLSKLEPLDGTNYRRWSQKLSIFFEQLEVDYVLIVKPPIDPLAPPINLPAPSDPKSSTGSIVVTTDQVKEASTIDPKKYKKDNKIVRGHLLNHMLDPSRYG
EDDAERKKYVVEKWLQFQMIDDKPIVEQIHEYENLVANVLSEGMKMCKILQANVLLEKFSPSWTDYQNYLKHKKKDLKLQDLISHMRTEEAN

CSPI03G21340 (gene) of Cucumber (PI 183967) v1 genome