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CSPI03G21540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G21540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr3:17821420..17822067
RNA-Seq ExpressionCSPI03G21540
SyntenyCSPI03G21540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-4545.64Show/hide
Query:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL
        NI+LI+W+ ++SP  KG L I+SV STNFALL KW W F  EK+ LWK +II+KY++  +G FP+  K+SS+ +PW ++ +   W    I W +  G+ +
Subjt:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL

Query:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA
        SFW   W+  +P + + PRLFALST K  S+   WN  + D  L+  RPLR  EE LW ++KAS   PLP+ G   P W LN+N  F  AS+K A
Subjt:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.4e-4646.91Show/hide
Query:  INLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS
        ++L+ W+ + SP  +G L I+ ++ TNFALL+KW W +  E + LWK II AKY     G+ P    +SSS++PW SI KG +W    + W IK G S S
Subjt:  INLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS

Query:  FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA
        FWHS WH  SP +   PRLFALST K  SI +MWN    D DL PRR LR  E  LW ++K S      ++G D+P W LN+NG +T+AS+K A
Subjt:  FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-4647.67Show/hide
Query:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL
        NI+LI+W+ V+SP  KG L I+SV STNFALL KW W F  EK  LWK +II+KY+Q  +G FP++ KYSS+ +PW ++     W    I W +  G+ +
Subjt:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL

Query:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK
        SFW   W+  SP +   PRLFALST K  S+ ++WN    D +++  RPLR  E+ LW ++KAS   PLPD G   P W LN+N  F  ASIK
Subjt:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-4647.15Show/hide
Query:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL
        NI+LI+W+ V+SP  KG L I+ V STNFALL KW W F  EK  LWK +II+KY+Q  +G FP++ KYSS+ +PW ++     W    I W +  G+ +
Subjt:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL

Query:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK
        SFW   W+  SP + + PRLFALST K  S+ ++WN    D +++  RPLR  E+ LW ++KAS   PLPD G   P W LN+N  F  ASIK
Subjt:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]7.6e-6489.39Show/hide
Query:  MSIIKGADWVLPQIKWTIKRGDSLSFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS-PPLPDSGFDNP
        MSIIKG DWVLPQIKW+IKRGDSL FWHSRWH+LSPFTQ+NPRLFALST+KGDSIANMWNAE AD DLYPRRPLRSVEEVLW+DMK S PPLPDSGFDNP
Subjt:  MSIIKGADWVLPQIKWTIKRGDSLSFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS-PPLPDSGFDNP

Query:  RWILNNNGSFTMASIKLARPPNNQDETNEDDG
        RW LNNNGSFT+ASIKLARP NNQDETNEDDG
Subjt:  RWILNNNGSFTMASIKLARPPNNQDETNEDDG

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein5.9e-4645.64Show/hide
Query:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL
        NI+LI+W+ ++SP  KG L I+SV STNFALL KW W F  EK+ LWK +II+KY++  +G FP+  K+SS+ +PW ++ +   W    I W +  G+ +
Subjt:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL

Query:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA
        SFW   W+  +P + + PRLFALST K  S+   WN  + D  L+  RPLR  EE LW ++KAS   PLP+ G   P W LN+N  F  AS+K A
Subjt:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein7.7e-4646.91Show/hide
Query:  INLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS
        ++L+ W+ + SP  +G L I+ ++ TNFALL+KW W +  E + LWK II AKY     G+ P    +SSS++PW SI KG +W    + W IK G S S
Subjt:  INLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS

Query:  FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA
        FWHS WH  SP +   PRLFALST K  SI +MWN    D DL PRR LR  E  LW ++K S      ++G D+P W LN+NG +T+AS+K A
Subjt:  FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein4.5e-4646.91Show/hide
Query:  INLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS
        ++L+ W+ + SP  +G L I+ ++ TNFALL+KW W +  E + LWK II AKY     G+ P    +SSS++PW SI KG +W    + W IK G S S
Subjt:  INLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS

Query:  FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA
        FWHS WH  SP +   PRLFALST K  SI +MWN    D DL PRR LR  E  LW ++K S      ++G D+P W LN+NG +T+AS+K A
Subjt:  FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIKLA

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein7.0e-4747.67Show/hide
Query:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL
        NI+LI+W+ V+SP  KG L I+SV STNFALL KW W F  EK  LWK +II+KY+Q  +G FP++ KYSS+ +PW ++     W    I W +  G+ +
Subjt:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL

Query:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK
        SFW   W+  SP +   PRLFALST K  S+ ++WN    D +++  RPLR  E+ LW ++KAS   PLPD G   P W LN+N  F  ASIK
Subjt:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.6e-4647.15Show/hide
Query:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL
        NI+LI+W+ V+SP  KG L I+ V STNFALL KW W F  EK  LWK +II+KY+Q  +G FP++ KYSS+ +PW ++     W    I W +  G+ +
Subjt:  NINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSL

Query:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK
        SFW   W+  SP + + PRLFALST K  S+ ++WN    D +++  RPLR  E+ LW ++KAS   PLPD G   P W LN+N  F  ASIK
Subjt:  SFWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKAS--PPLPDSGFDNPRWILNNNGSFTMASIK

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.1e-1132.23Show/hide
Query:  SVDKKNINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKG-ADWVLPQIKWTI
        + +KK  +L+KWS V SP  +G L + + +S N AL+SK  W   +EKN LW  ++  KY    + +        S  + W SI  G  D V   + W  
Subjt:  SVDKKNINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKG-ADWVLPQIKWTI

Query:  KRGDSLSFWHSRWHDLSPFTQ
          G  + FW  RW    P  +
Subjt:  KRGDSLSFWHSRWHDLSPFTQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATTTTCCGTTGATAAGAAAAACATCAACCTCATCAAATGGTCAATGGTGCTGTCTCCTATCAACAAAGGTGACCTGGACATAAACAGCGTTCAGAGTACAAA
TTTCGCTCTACTGAGCAAGTGGACCTGGATATTTTACGAAGAAAAAAATCATCTGTGGAAATGCATAATCATTGCTAAATATGAACAATCATACTTGGGTGAATTTCCAA
CTAAAAGCAAATATAGCAGCTCCAAAGCCCCTTGGATGTCTATCATTAAAGGAGCTGACTGGGTCCTTCCTCAAATCAAATGGACCATTAAAAGGGGAGACTCCCTCTCA
TTCTGGCATAGCCGATGGCATGATCTTAGTCCATTCACACAGTCCAACCCAAGATTATTTGCACTGTCTACCAGGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGA
AACAGCCGACTGCGACCTCTACCCTCGAAGACCATTAAGAAGTGTTGAGGAAGTACTTTGGGACGATATGAAAGCCTCCCCCCCATTGCCTGATTCTGGATTCGACAATC
CTCGCTGGATTTTAAACAACAATGGCAGCTTCACTATGGCTTCTATCAAACTCGCAAGACCTCCAAACAACCAAGATGAGACCAACGAAGATGATGGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAATTTTCCGTTGATAAGAAAAACATCAACCTCATCAAATGGTCAATGGTGCTGTCTCCTATCAACAAAGGTGACCTGGACATAAACAGCGTTCAGAGTACAAA
TTTCGCTCTACTGAGCAAGTGGACCTGGATATTTTACGAAGAAAAAAATCATCTGTGGAAATGCATAATCATTGCTAAATATGAACAATCATACTTGGGTGAATTTCCAA
CTAAAAGCAAATATAGCAGCTCCAAAGCCCCTTGGATGTCTATCATTAAAGGAGCTGACTGGGTCCTTCCTCAAATCAAATGGACCATTAAAAGGGGAGACTCCCTCTCA
TTCTGGCATAGCCGATGGCATGATCTTAGTCCATTCACACAGTCCAACCCAAGATTATTTGCACTGTCTACCAGGAAAGGAGACTCCATTGCAAACATGTGGAATGCAGA
AACAGCCGACTGCGACCTCTACCCTCGAAGACCATTAAGAAGTGTTGAGGAAGTACTTTGGGACGATATGAAAGCCTCCCCCCCATTGCCTGATTCTGGATTCGACAATC
CTCGCTGGATTTTAAACAACAATGGCAGCTTCACTATGGCTTCTATCAAACTCGCAAGACCTCCAAACAACCAAGATGAGACCAACGAAGATGATGGA
Protein sequenceShow/hide protein sequence
MEKFSVDKKNINLIKWSMVLSPINKGDLDINSVQSTNFALLSKWTWIFYEEKNHLWKCIIIAKYEQSYLGEFPTKSKYSSSKAPWMSIIKGADWVLPQIKWTIKRGDSLS
FWHSRWHDLSPFTQSNPRLFALSTRKGDSIANMWNAETADCDLYPRRPLRSVEEVLWDDMKASPPLPDSGFDNPRWILNNNGSFTMASIKLARPPNNQDETNEDDG