; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G21790 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G21790
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDouble-stranded RNA-binding protein 4-like isoform X3
Genome locationChr3:18197221..18199325
RNA-Seq ExpressionCSPI03G21790
SyntenyCSPI03G21790
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsIPR011907 - Ribonuclease III
IPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01508.1 double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo var. makuwa]2.6e-7288.89Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVI
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLREV+VI
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVI

XP_004149792.1 uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]2.3e-81100Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

XP_008457066.1 PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]8.4e-7189.24Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

XP_008457068.1 PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo]8.4e-7189.24Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

XP_011651405.1 double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]2.3e-81100Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

TrEMBL top hitse value%identityAlignment
A0A0A0LAZ4 DRBM domain-containing protein3.2e-84100Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
        EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ

A0A1S3C485 uncharacterized protein LOC103496837 isoform X14.0e-7189.24Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

A0A1S3C4R2 uncharacterized protein LOC103496837 isoform X24.0e-7189.24Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

A0A5A7V1Q3 Double-stranded RNA-binding protein 4-like isoform X34.0e-7189.24Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE

A0A5D3BR72 Double-stranded RNA-binding protein 4-like isoform X31.3e-7288.89Show/hide
Query:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID
        ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAAPAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTID
Subjt:  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTID

Query:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVI
        EGSP LPK+RSTV++DEVHYVSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLREV+VI
Subjt:  EGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVI

SwissProt top hitse value%identityAlignment
O04492 Double-stranded RNA-binding protein 11.5e-0943.24Show/hide
Query:  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK
        +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ AA VA   ++K ++
Subjt:  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK

Q0DJA3 Double-stranded RNA-binding protein 39.4e-0938.24Show/hide
Query:  PIP----SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKD
        P+P    + +PAPI +         +V+K+ L EY QKA +  P Y T  EG    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    
Subjt:  PIP----SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKD

Query:  DA
        +A
Subjt:  DA

Q0IQN6 Double-stranded RNA-binding protein 83.6e-0837.84Show/hide
Query:  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAF
        PP+ LP    +  P P+ A A I   N       +V+K+ L EY QK  +  P Y T  EG    P ++STV+++   Y S   F NR+AAEQ AA VA 
Subjt:  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAF

Query:  EYISKKTKDDA
          I K    +A
Subjt:  EYISKKTKDDA

Q0IV63 Double-stranded RNA-binding protein 71.2e-0838.74Show/hide
Query:  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAF
        PP+ LP    +  P P+ A A I   N       +V+K+ L EY QKA +  P Y T  EG    P ++STV+++   Y S   F NR+AAEQ AA VA 
Subjt:  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAF

Query:  EYISKKTKDDA
          I K    +A
Subjt:  EYISKKTKDDA

Q6YW64 Double-stranded RNA-binding protein 43.0e-0738.54Show/hide
Query:  SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYI--SKKTKDD
        S AP P P P+ +       YK+ L EY Q+A   +P+Y T  +G     K++STVMVD   + S    R  + AEQDAA+VA++ +   K+T+ D
Subjt:  SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYI--SKKTKDD

Arabidopsis top hitse value%identityAlignment
AT1G09700.1 dsRNA-binding domain-like superfamily protein1.0e-1043.24Show/hide
Query:  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK
        +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ AA VA   ++K ++
Subjt:  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTK

AT2G28380.1 dsRNA-binding protein 21.1e-0433.8Show/hide
Query:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK
        +YKN L E  Q++   +P Y  I EG    P++++TV  +   + SP      R AE  AA VA   +S +
Subjt:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK

AT3G26932.1 dsRNA-binding protein 32.5e-0432.39Show/hide
Query:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK
        +YKN L E  Q++  ++P Y    EG    P+++++V  +   + SP      R AE  AA VA   +S K
Subjt:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK

AT3G26932.2 dsRNA-binding protein 32.5e-0432.39Show/hide
Query:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK
        +YKN L E  Q++  ++P Y    EG    P+++++V  +   + SP      R AE  AA VA   +S K
Subjt:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK

AT5G41070.1 dsRNA-binding protein 59.4e-0430.99Show/hide
Query:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK
        +YKN L E  Q++   +P Y  I EG    P+++++V  +   + SP      R AE  AA V+   +S +
Subjt:  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATAC
TTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTC
AAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGG
TCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAA
GACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA
mRNA sequenceShow/hide mRNA sequence
AATTTAACCCTTCAACGTCATTAATATCTCGTCGTCAGGATTAAGAAACCCTGATCATCCTTTCACAGTGAAGAGAGCGAAAATCACCCGACATTCGTTCATTCATTCAT
AGCCACTGACTGATCGTTCCCATTTCACCAATTTGTTCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCAC
CGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCT
GTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTA
CACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGT
CTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAG
GTACGAGTTATACAGTGA
Protein sequenceShow/hide protein sequence
MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYR
STVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ