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CSPI03G22300 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G22300
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr3:18740602..18741253
RNA-Seq ExpressionCSPI03G22300
SyntenyCSPI03G22300
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]5.9e-4894.79Show/hide
Query:  KPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE
        +PMLTTDFELQLWPEQVLGIRWNK+LGANEWLVKWKNLPETEATWE VYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPT  ERE
Subjt:  KPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]3.9e-3194.59Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML
        +IEELLDELHGATVFSKLDMKS YHQIRMQ+EDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKP L
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML

KAE8637561.1 hypothetical protein CSA_017659 [Cucumis sativus]9.5e-3875.79Show/hide
Query:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE
        PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LPE+EATWE+ YQMNQQFP+FHLEDKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Subjt:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]6.2e-3781.4Show/hide
Query:  KPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        +P+LT DFELQLWPE VLGIRWNKELG NEWL+KWKNLP++EATWE+VY +NQQFP FHLEDKVNLEPRG+VRPPIIHTY R+G+K
Subjt:  KPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

KAE8637598.1 hypothetical protein CSA_022681 [Cucumis sativus]9.5e-3089.19Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML
        +IEELLDELHGAT FSKLD+KSGYHQIRM++EDVEKTAF THEGHYEFLVMPFGLTNAPATFQSLMN+VFKP L
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]1.6e-3784.27Show/hide
Query:  QVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        Q+ +P+LT +FELQL PE VLGIRWNK+LGANEWLVKWK LPE EATWEAVYQMNQQFPTFHLEDKVNLEPRG+VRPPIIHTY RKG+K
Subjt:  QVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]2.5e-3091.89Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML
        +IEELLDELHGATVFSKLD+KSGYHQIRM++EDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMN VFKP L
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML

KGN62557.2 hypothetical protein Csa_018739 [Cucumis sativus]6.2e-3774.74Show/hide
Query:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE
        PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LP +EATWE+ YQMNQQFP+FHLEDKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Subjt:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE

TrEMBL top hitse value%identityAlignment
A0A5A7TRS1 Ty3/gypsy retrotransposon protein3.0e-3774.74Show/hide
Query:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE
        PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LP +EATWE+ YQMNQQFP+FHLEDKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Subjt:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE

A0A5A7U9P7 Retrotransposable element Tf21.5e-3681.18Show/hide
Query:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        PMLT +FELQLWPE VLGIRWNKELGANEWL+KW++LPE+EATWE+VYQMNQQFP+FHLEDKVN+EPRG+VRPPI+HTY R+ +K
Subjt:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

A0A5A7VAR2 Chromo domain-containing protein1.5e-3684.71Show/hide
Query:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK
        PMLT +FELQLWPE VL IRWNKELGANEWLVKWK LPE EATWE+V+Q+NQQFPTFHLEDKVNLEPRG+VRPPII+TY R+GKK
Subjt:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKK

A0A5D3BBH7 Ty3/gypsy retrotransposon protein1.9e-3673.2Show/hide
Query:  QVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKE
        Q+ +P LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP++EATWE+VY MNQQFP+FHLEDKV+LEPRG+VRPPII+ Y R+GKKG     KE
Subjt:  QVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKE

A0A5D3BBH7 Ty3/gypsy retrotransposon protein5.4e-3190.54Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML
        +IEELLDELHGATVFSKLD+KSGYHQIRM++ED+EKTAFRTHEGHYEF+VMPFGLTNAPATFQSLMNQVFKP L
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML

A0A5D3E0H6 Ty3/gypsy retrotransposon protein4.6e-3875.79Show/hide
Query:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE
        PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LPE+EATWE+ YQMNQQFP+FHLEDKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Subjt:  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.6e-1652.05Show/hide
Query:  IEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML
        ++E+L +L     F+ +D+  G+HQI M  E V KTAF T  GHYE+L MPFGL NAPATFQ  MN + +P+L
Subjt:  IEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML

P0CT34 Transposon Tf2-1 polyprotein3.4e-1450.72Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        +IE+LL ++ G+T+F+KLD+KS YH IR++K D  K AFR   G +E+LVMP+G++ APA FQ  +N +
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

P0CT35 Transposon Tf2-2 polyprotein3.4e-1450.72Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        +IE+LL ++ G+T+F+KLD+KS YH IR++K D  K AFR   G +E+LVMP+G++ APA FQ  +N +
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

P0CT41 Transposon Tf2-12 polyprotein3.4e-1450.72Show/hide
Query:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        +IE+LL ++ G+T+F+KLD+KS YH IR++K D  K AFR   G +E+LVMP+G++ APA FQ  +N +
Subjt:  MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

P20825 Retrovirus-related Pol polyprotein from transposon 2973.6e-1650.68Show/hide
Query:  IEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML
        ++E+L +L     F+ +D+  G+HQI M +E + KTAF T  GHYE+L MPFGL NAPATFQ  MN + +P+L
Subjt:  IEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPML

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGAAGAACTGCTGGATGAATTACATGGGGCCACGGTTTTCTCGAAATTAGATATGAAGTCCGGTTACCATCAAATAAGGATGCAGAAGGAAGATGTTGAG
AAGACCGCGTTCAGAACACATGAGGGTCACTATGAATTTCTGGTAATGCCCTTCGGTCTTACAAACGCACCAGCCACCTTCCAGTCCTTGATGAATCAGGTATTC
AAACCTATGTTGACAACAGATTTCGAGTTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAACAAAGAATTGGGAGCTAACGAATGGCTAGTCAAGTGG
AAGAATTTACCAGAAACTGAAGCCACATGGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATTCCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGT
GTTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGA
mRNA sequenceShow/hide mRNA sequence
CAACCAAGTAACCATATCAGACAAATTTCCTATCCCAATGATAGAAGAACTGCTGGATGAATTACATGGGGCCACGGTTTTCTCGAAATTAGATATGAAGTCCGG
TTACCATCAAATAAGGATGCAGAAGGAAGATGTTGAGAAGACCGCGTTCAGAACACATGAGGGTCACTATGAATTTCTGGTAATGCCCTTCGGTCTTACAAACGC
ACCAGCCACCTTCCAGTCCTTGATGAATCAGGTATTCAAACCTATGTTGACAACAGATTTCGAGTTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAA
CAAAGAATTGGGAGCTAACGAATGGCTAGTCAAGTGGAAGAATTTACCAGAAACTGAAGCCACATGGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATT
CCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGTGTTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAA
GGAGAGAGAATGAGTGGGAAATAAAAGAATGTGCAGGTGGGTCCCACTGGGTAGGAATTTGAGGGTG
Protein sequenceShow/hide protein sequence
MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKW
KNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE