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CSPI03G22380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G22380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr3:18839903..18840304
RNA-Seq ExpressionCSPI03G22380
SyntenyCSPI03G22380
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]1.5e-0654.29Show/hide
Query:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGT
        MEERLE  E ++  LK++ LE+ KS++RLA+ELREN    + +ES TS+GS++KMKGKMEE  I  E  T
Subjt:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGT

KAA0060164.1 uncharacterized protein E6C27_scaffold542G00330 [Cucumis melo var. makuwa]1.0e-1869.62Show/hide
Query:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDER
        EDIR+LKD+ L LSKS+E LAEELREN VS R +ES  SEGS+LKM  KMEED   +E+GTWEQALKWAANCK +  ER
Subjt:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDER

KAE8652492.1 hypothetical protein Csa_013556 [Cucumis sativus]7.3e-4982.84Show/hide
Query:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKL-EVDERGFHGHGSICRN
        MEERLEKNE DIRELKDVTLELSKSIERLAEELRE+NVSCR +ESATSEGS+LKMKGKMEEDS AVERGTWEQALKWAA+  L  +     HGHGSICRN
Subjt:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKL-EVDERGFHGHGSICRN

Query:  GLWIARQKEYRGVLKQYTKSFLKGCKELKKERRR
        GL IARQKEYRGVLKQY KSFLKGCKE+KK  +R
Subjt:  GLWIARQKEYRGVLKQYTKSFLKGCKELKKERRR

TYK04250.1 uncharacterized protein E5676_scaffold758G00280 [Cucumis melo var. makuwa]2.5e-2071.25Show/hide
Query:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDERG
        EDIR+LKD+ L LSKS+E LAEELREN VS R +ES  SEGS+LKM GKMEED   +E+GTWEQALKWAANCK +  ERG
Subjt:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDERG

TYK11078.1 hypothetical protein E5676_scaffold73G00650 [Cucumis melo var. makuwa]1.7e-0842.03Show/hide
Query:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEG------SMLKMKGKMEEDSIAVERGTWEQALKWAANCKL-EVDERGFHGH
        MEERLE NE DI ELKD+ L LSKS ERL EELRE +VS + +E  TSEG      + L+ K K +++ + + +G   + L      K+  + ++   GH
Subjt:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEG------SMLKMKGKMEEDSIAVERGTWEQALKWAANCKL-EVDERGFHGH

Query:  GSICRNGLWIARQKEYRGVLKQYTKSFLKGCKELKKER
           CRNGL IAR KE +    Q  K      K  KK+R
Subjt:  GSICRNGLWIARQKEYRGVLKQYTKSFLKGCKELKKER

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein7.5e-0754.29Show/hide
Query:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGT
        MEERLE  E ++  LK++ LE+ KS++RLA+ELREN    + +ES TS+GS++KMKGKMEE  I  E  T
Subjt:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGT

A0A5A7UYN1 Uncharacterized protein5.0e-1969.62Show/hide
Query:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDER
        EDIR+LKD+ L LSKS+E LAEELREN VS R +ES  SEGS+LKM  KMEED   +E+GTWEQALKWAANCK +  ER
Subjt:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDER

A0A5D3BYR5 Uncharacterized protein1.2e-2071.25Show/hide
Query:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDERG
        EDIR+LKD+ L LSKS+E LAEELREN VS R +ES  SEGS+LKM GKMEED   +E+GTWEQALKWAANCK +  ERG
Subjt:  EDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDERG

A0A5D3CIQ8 Uncharacterized protein8.0e-0942.03Show/hide
Query:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEG------SMLKMKGKMEEDSIAVERGTWEQALKWAANCKL-EVDERGFHGH
        MEERLE NE DI ELKD+ L LSKS ERL EELRE +VS + +E  TSEG      + L+ K K +++ + + +G   + L      K+  + ++   GH
Subjt:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEG------SMLKMKGKMEEDSIAVERGTWEQALKWAANCKL-EVDERGFHGH

Query:  GSICRNGLWIARQKEYRGVLKQYTKSFLKGCKELKKER
           CRNGL IAR KE +    Q  K      K  KK+R
Subjt:  GSICRNGLWIARQKEYRGVLKQYTKSFLKGCKELKKER

A0A5D3CXP0 Uncharacterized protein7.5e-0754.29Show/hide
Query:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGT
        MEERLE  E ++  LK++ LE+ KS++RLA+ELREN    + +ES TS+GS++KMKGKMEE  I  E  T
Subjt:  MEERLEKNE-DIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGAGGTTGGAGAAGAATGAGGACATTAGGGAACTTAAAGATGTAACTTTGGAGTTGTCCAAAAGCATTGAAAGGCTGGCAGAGGAATTACGAGAAAACAATGT
TAGTTGCCGATGGAAAGAATCTGCTACGTCGGAGGGATCGATGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGATAGCAGTTGAGAGAGGGACTTGGGAGCAAGCAC
TTAAATGGGCTGCTAATTGCAAACTTGAGGTGGATGAGAGGGGTTTCCATGGACATGGGAGCATATGCAGAAATGGATTGTGGATTGCAAGGCAGAAAGAATACAGAGGA
GTGCTAAAACAATACACCAAAAGCTTTCTGAAGGGCTGCAAAGAGTTAAAGAAAGAGCGGAGAAGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGAGGTTGGAGAAGAATGAGGACATTAGGGAACTTAAAGATGTAACTTTGGAGTTGTCCAAAAGCATTGAAAGGCTGGCAGAGGAATTACGAGAAAACAATGT
TAGTTGCCGATGGAAAGAATCTGCTACGTCGGAGGGATCGATGTTGAAAATGAAAGGAAAGATGGAAGAAGACTCGATAGCAGTTGAGAGAGGGACTTGGGAGCAAGCAC
TTAAATGGGCTGCTAATTGCAAACTTGAGGTGGATGAGAGGGGTTTCCATGGACATGGGAGCATATGCAGAAATGGATTGTGGATTGCAAGGCAGAAAGAATACAGAGGA
GTGCTAAAACAATACACCAAAAGCTTTCTGAAGGGCTGCAAAGAGTTAAAGAAAGAGCGGAGAAGAAACTAG
Protein sequenceShow/hide protein sequence
MEERLEKNEDIRELKDVTLELSKSIERLAEELRENNVSCRWKESATSEGSMLKMKGKMEEDSIAVERGTWEQALKWAANCKLEVDERGFHGHGSICRNGLWIARQKEYRG
VLKQYTKSFLKGCKELKKERRRN