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CSPI03G22420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G22420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNucleolar protein 10
Genome locationChr3:18867143..18875830
RNA-Seq ExpressionCSPI03G22420
SyntenyCSPI03G22420
Gene Ontology termsGO:0010197 - polar nucleus fusion (biological process)
GO:0031118 - rRNA pseudouridine synthesis (biological process)
GO:0031120 - snRNA pseudouridine synthesis (biological process)
GO:0015030 - Cajal body (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031429 - box H/ACA snoRNP complex (cellular component)
GO:0090661 - box H/ACA telomerase RNP complex (cellular component)
GO:0034513 - box H/ACA snoRNA binding (molecular function)
GO:0070034 - telomerase RNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606368.1 H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2994.12Show/hide
Query:  CLSTMYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        CL+TMYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Subjt:  CLSTMYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

KCW88531.1 hypothetical protein EUGRSUZ_A00909, partial [Eucalyptus grandis]4.8e-2883.75Show/hide
Query:  LHLCSFRQSLVGCLSTMYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        L L  F   LV   + MYLQFYIN+NGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP KY
Subjt:  LHLCSFRQSLVGCLSTMYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

THU64153.1 hypothetical protein C4D60_Mb01t23480 [Musa balbisiana]4.8e-2898.44Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLG+ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_009410656.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Musa acuminata subsp. malaccensis]4.8e-2898.44Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLG+ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_011651438.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]2.8e-28100Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

TrEMBL top hitse value%identityAlignment
A0A059DDR4 Nucleolar protein 10 (Fragment)2.3e-2883.75Show/hide
Query:  LHLCSFRQSLVGCLSTMYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        L L  F   LV   + MYLQFYIN+NGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP KY
Subjt:  LHLCSFRQSLVGCLSTMYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A2G9GIP1 Nucleolar protein 101.4e-28100Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A4S8JPA3 Nucleolar protein 102.3e-2898.44Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLG+ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A7J7CYK9 Nucleolar protein 101.4e-28100Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

M0S1K9 Nucleolar protein 102.3e-2898.44Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQFYINENGDKVYTTKKESPLG+ATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

SwissProt top hitse value%identityAlignment
Q6DRH5 H/ACA ribonucleoprotein complex subunit 31.1e-1972.58Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+LQFY+NENG++VYT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQP P
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein3.0e-2585.94Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQ YINE G+KVYTTKKESPLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Q9CQS2 H/ACA ribonucleoprotein complex subunit 32.8e-1867.74Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+LQ+Y+NE GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q9NPE3 H/ACA ribonucleoprotein complex subunit 32.8e-1867.74Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        M+LQ+Y+NE GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q9V5P6 H/ACA ribonucleoprotein complex subunit 33.6e-1868.75Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYL + INENGD+VYT KK +  G  T SAHPARFSP+DKYSRQR+ +KKRFGLL TQ+P P Y
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein2.2e-2685.94Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQ YINE G+KVYTTKKESPLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein2.0e-2484.38Show/hide
Query:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        MYLQ YINE G+KVYTT KESPLGLAT+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAGACGCAGTGAAAGATGTCTTGGGTCAAGGATGAAAAAAGTAAGAAACGAAGATAATCCAATCATTATCGATGATTCTGAGGAAGGATCAAAGAACACCGAATT
ACCCGTAGAAGAAAGTGATGAATCTGACGAGCCGCCCTTCGTCCCTACCTCCCGTTCATTGGCGCGCCCCCGGTCGTTCGTTCTTGGTCTCGCCGCCGTTCGCCTTTTGT
TGCACCTCTGTTCATTTCGTCAGTCACTGGTTGGGTGCCTATCGACGATGTATCTTCAGTTTTACATAAACGAAAATGGTGATAAAGTCTACACCACAAAGAAGGAATCT
CCTCTAGGTTTGGCCACGCAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATATTCGAGGCAAAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTTCCTACACA
GCAGCCACCTCCAAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAGACGCAGTGAAAGATGTCTTGGGTCAAGGATGAAAAAAGTAAGAAACGAAGATAATCCAATCATTATCGATGATTCTGAGGAAGGATCAAAGAACACCGAATT
ACCCGTAGAAGAAAGTGATGAATCTGACGAGCCGCCCTTCGTCCCTACCTCCCGTTCATTGGCGCGCCCCCGGTCGTTCGTTCTTGGTCTCGCCGCCGTTCGCCTTTTGT
TGCACCTCTGTTCATTTCGTCAGTCACTGGTTGGGTGCCTATCGACGATGTATCTTCAGTTTTACATAAACGAAAATGGTGATAAAGTCTACACCACAAAGAAGGAATCT
CCTCTAGGTTTGGCCACGCAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATATTCGAGGCAAAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTTCCTACACA
GCAGCCACCTCCAAAGTACTGA
Protein sequenceShow/hide protein sequence
MVRRSERCLGSRMKKVRNEDNPIIIDDSEEGSKNTELPVEESDESDEPPFVPTSRSLARPRSFVLGLAAVRLLLHLCSFRQSLVGCLSTMYLQFYINENGDKVYTTKKES
PLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY