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CSPI03G23310 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G23310
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
Genome locationChr3:20151244..20151942
RNA-Seq ExpressionCSPI03G23310
SyntenyCSPI03G23310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031701.1 hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa]9.0e-2248.15Show/hide
Query:  RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLT
        RKFF G +KIR++VV KFY    +Q + +  +D K  YF+ + IN+LY  P DAE     +IT  +K  A E L+ IAWLG ++++ P G++ LYPHQLT
Subjt:  RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLT

Query:  IDANVWLF
        I+A+VWLF
Subjt:  IDANVWLF

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-3765.91Show/hide
Query:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWL
        KIRMDVVHKFYD+KF+  DLF+TI+ +K YF+ +VINELY  P DAEYLGQ I+TK  KGLAKE LKV+AW G   EV PM  R+QLYPH LT  ANVW+
Subjt:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWL

Query:  FFIKKKIVPTRYDSTISVDYAMNYFYYIMTKK
        FF K KI PT YDSTIS+DY +   Y IM KK
Subjt:  FFIKKKIVPTRYDSTISVDYAMNYFYYIMTKK

KAE8650696.1 hypothetical protein Csa_023718, partial [Cucumis sativus]8.1e-4797.96Show/hide
Query:  ELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV
        ELKVIAWLGTKWEVAPMGRFQLYPHQLTI+ANVWLFFIKKKIVPTRYDSTISVDYAMN FYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV
Subjt:  ELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV

KGN57984.1 hypothetical protein Csa_010152 [Cucumis sativus]6.6e-4997.17Show/hide
Query:  MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKL
        MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKL
Subjt:  MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKL

Query:  IKGLAK
        IKGLAK
Subjt:  IKGLAK

TYK05842.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-2567.01Show/hide
Query:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN
        KIRMDVVHKFYD+KF+  DLF+TI  +K YF+ +VINELY  P DAEYLGQ I+TK  KGLAKE LKV+AW G   EV PM  R+QLYPH LT  AN
Subjt:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN

TrEMBL top hitse value%identityAlignment
A0A0A0LAL7 Uncharacterized protein3.2e-4997.17Show/hide
Query:  MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKL
        MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKL
Subjt:  MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKL

Query:  IKGLAK
        IKGLAK
Subjt:  IKGLAK

A0A5A7SQ81 Uncharacterized protein4.4e-2248.15Show/hide
Query:  RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLT
        RKFF G +KIR++VV KFY    +Q + +  +D K  YF+ + IN+LY  P DAE     +IT  +K  A E L+ IAWLG ++++ P G++ LYPHQLT
Subjt:  RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLT

Query:  IDANVWLF
        I+A+VWLF
Subjt:  IDANVWLF

A0A5A7V6M5 Gag/pol protein1.3e-3765.91Show/hide
Query:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWL
        KIRMDVVHKFYD+KF+  DLF+TI+ +K YF+ +VINELY  P DAEYLGQ I+TK  KGLAKE LKV+AW G   EV PM  R+QLYPH LT  ANVW+
Subjt:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWL

Query:  FFIKKKIVPTRYDSTISVDYAMNYFYYIMTKK
        FF K KI PT YDSTIS+DY +   Y IM KK
Subjt:  FFIKKKIVPTRYDSTISVDYAMNYFYYIMTKK

A0A5D3C3P6 Gag/pol protein2.5e-2567.01Show/hide
Query:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN
        KIRMDVVHKFYD+KF+  DLF+TI  +K YF+ +VINELY  P DAEYLGQ I+TK  KGLAKE LKV+AW G   EV PM  R+QLYPH LT  AN
Subjt:  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN

A0A5D3DES7 Uncharacterized protein1.4e-2044.53Show/hide
Query:  FYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAE-YLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVP
        FY  K+H  + +V ++ KK  F+ + INELYGL  D + Y  Q++I +  KG ++  +++IAWLG  W        QLYPHQLT +ANVWL FIKKKI+P
Subjt:  FYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAE-YLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVP

Query:  TRYDSTISVDYAMNYFYYIMTKKRQSTG
          YDST+ ++Y M   Y  M K+  + G
Subjt:  TRYDSTISVDYAMNYFYYIMTKKRQSTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAA
GTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACT
TCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAA
GTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAA
AAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAA
AACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAA
GTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACT
TCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAA
GTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAA
AAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAA
AACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA
Protein sequenceShow/hide protein sequence
MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELK
VIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV