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CSPI03G23540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G23540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr3:20447025..20447318
RNA-Seq ExpressionCSPI03G23540
SyntenyCSPI03G23540
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037861.1 hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa]1.4e-2068.49Show/hide
Query:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCF
        M+ EAHS+N NA ++QKE +YDRV QRL+D++  QPEKKF IE+LKALGAT+F GTT P+E EKW RTLEKCF
Subjt:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCF

KAA0066608.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa]1.7e-2363.16Show/hide
Query:  EAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDK-DW
        E H VN +  +EQ+E VYDRV Q ++D+M  Q EKKFGIERL+ALG TEFTGTT+P E +K I+TLEKCFRV QC Q+ K  LA+FLLQ  K DW
Subjt:  EAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDK-DW

KGN58005.1 hypothetical protein Csa_009787 [Cucumis sativus]3.2e-33100Show/hide
Query:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR
        MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR
Subjt:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR

KGN61535.1 hypothetical protein Csa_006696 [Cucumis sativus]7.1e-2561.22Show/hide
Query:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW
        ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    EE EKWIRTLEKCFRVMQCP++ +  LAVF LL+R +DW
Subjt:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]9.2e-1759.04Show/hide
Query:  VYDRVTQRL---VDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQR--DKDW
        V+DR+TQRL   V  + + PEKKFGIERLKALGAT F GTT P + E W+  +EKCF+VM+CP+D K  LA FLLQ+  +K W
Subjt:  VYDRVTQRL---VDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQR--DKDW

TrEMBL top hitse value%identityAlignment
A0A0A0L7X2 Uncharacterized protein1.5e-33100Show/hide
Query:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR
        MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR
Subjt:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR

A0A0A0LI31 Uncharacterized protein3.4e-2561.22Show/hide
Query:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW
        ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    EE EKWIRTLEKCFRVMQCP++ +  LAVF LL+R +DW
Subjt:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW

A0A5D3CDA4 Uncharacterized protein6.7e-2168.49Show/hide
Query:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCF
        M+ EAHS+N NA ++QKE +YDRV QRL+D++  QPEKKF IE+LKALGAT+F GTT P+E EKW RTLEKCF
Subjt:  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCF

A0A5D3CSN0 A-kinase anchor protein 128.4e-2463.16Show/hide
Query:  EAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDK-DW
        E H VN +  +EQ+E VYDRV Q ++D+M  Q EKKFGIERL+ALG TEFTGTT+P E +K I+TLEKCFRV QC Q+ K  LA+FLLQ  K DW
Subjt:  EAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDK-DW

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.4e-1549.51Show/hide
Query:  SEAHSVNLNAMKEQKEVVYDRVTQRLVD-IMAHQ--PEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQ-----RD
        S+A S   +     +E + DR+ QRL+  I + Q  PEKK+GIERLKALGAT F GTT P + E W+  +EKCFRV +CP+D K  LA FLLQ     + 
Subjt:  SEAHSVNLNAMKEQKEVVYDRVTQRLVD-IMAHQ--PEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQ-----RD

Query:  KDW
        +DW
Subjt:  KDW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGA
AAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCC
GTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGA
AAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCC
GTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA
Protein sequenceShow/hide protein sequence
MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDKDW