; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G23930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G23930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr3:21021973..21023112
RNA-Seq ExpressionCSPI03G23930
SyntenyCSPI03G23930
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK13856.1 Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]2.4e-9648.94Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  +  YV +C +CQQ K     P GLLQ LPI   VWEDISMDFIEGLP S+  D ILV+VDRLSKYAHF+ L HPF A +VA +F++E++ LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        SIVSDRD IF SLFW+EL+RL GT L+RS+ YHPQTDGQTE+VNR ++TYLRCF    P+ WAKWL WAE SYNT+ HT+T M+P + LYGR PP ++  
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE
         K  + V  ++ ++++RD I+  L+ NL++AQ   KH                                   KLAPRF GPF ++ RIG  AY L LP  
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTRE-KWDNLEVLICWSDGTPESATWEQVTLI
        S IHPVFHVS+L+KVVG+   L  IP  +  D+ + +   E+L VR+ R+ K    E LI W       ATWE ++ I
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTRE-KWDNLEVLICWSDGTPESATWEQVTLI

KFK28310.1 hypothetical protein AALP_AA8G499800 [Arabis alpina]1.7e-9750.79Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M A I+T+VAEC VCQ+ KY +L P+GLLQ LPI  +VWEDIS+DF+EGLPKSE +D ILVVVDRL+KYAHFI L+HPFGAK +AAVF++EI+ LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        ++VSDRD +FT +FW EL+RL GT L  ST YHPQTDGQTEV NRG++T LRCF  + PK+WA +L WAE  YN++ H+A  MTP +ALYGR PPS+L +
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+    ++  +KERD ++ ILK N+LKAQ   KH                                   KLA RF GP+ ++AR+G VAY L LP +
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPE-SATWEQVTLIQE
        S IH  FHVS L+  VGS+     +P  L A+  ++      +GVR    +    EVLI W  G PE  +TWE V +IQE
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPE-SATWEQVTLIQE

PKU67907.1 putative mitochondrial protein [Dendrobium catenatum]2.2e-9751.19Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  I   VA+C  CQ+ K++++ P GLLQ L + ++VWE+I+MDFI+GLPKSE Y VI VVVDRLSKYAHFIPL HP+ A  VA  F+REI+ LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        SIVSDRD +F S FW EL+R+ GT L+RST YHPQTDGQTEVVNR ++TYLRCF   TPKQWAKWLAWAE  YNT+ H+AT MTP + LYGR PP ++ Y
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+ V+ VD  +KERD +L  LK +LL+AQ   K                                  + KLA R+ GPF +  +IG VAY L LP  
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPESATWEQVTLI
        + IHPVFHVS LRKVVG +     +P  L  D+ + L  + V GVR   EK +  EV I WS      ATWE +  I
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPESATWEQVTLI

PWA91318.1 Ty3/gypsy retrotransposon protein [Artemisia annua]5.6e-10149.74Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  I   V+EC VCQ+ KY +L P+GLLQ L + ++VW++++MDFI+GLP SE + VILVVVDRLSKYAHF+PL HP+ AK +AA FMRE+I LHG P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        ++V+DRD +F S FW+E+++  GT L+RST YHPQTDGQTEVVNR ++TYLRCF+   PKQW++WL+WAE  YNT+ HT++  TP + LYGR PP ++PY
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+   EVD  ++ERD +L  LK NLLKAQ   K                                  + KLAPR+ GPF ++ +IG VAY L LP+ 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVR--KTREKWDNLEVLICWSDGTPESATWEQVTLIQ
        + IHPVFHVS L+KVVG        PK+L+ D+ M +   EVLGVR  K+  K D  EVLI W +     +TWE + LI+
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVR--KTREKWDNLEVLICWSDGTPESATWEQVTLIQ

XP_017245360.1 PREDICTED: pleiotropic drug resistance protein 1-like [Daucus carota subsp. sativus]2.9e-9749.6Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  I  YV +CS+CQQAK  +L+P GLLQ L I   VW+ ISMDF+EGLP S  ++ +LVVVDRL+KY+HFIPL+HP+ A  VA VF+RE++  HG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        +IVSDRD +F SLFW EL++L GT L +ST YHPQ+DGQTEVVN+ ++TYLRCF  + PK W+KWLAWAE  YNT+ H +T  TP +ALYGRPPP I+ Y
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------HP------------KLAPRFIGPFVIVARIGPVAYHLALPKE
            + V  ++  M ERDGIL  LKANL++AQH  K                      HP            KLA ++ GPF ++ R+G VAY L LP E
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------HP------------KLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDN-LEVLICWSDGTPESATWE
        S IHPVFHVS+L+K +G    +  +PK +    S +    ++LGVR    + +  +EVLI W D   E ATWE
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDN-LEVLICWSDGTPESATWE

TrEMBL top hitse value%identityAlignment
A0A087GEK8 Uncharacterized protein8.2e-9850.79Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M A I+T+VAEC VCQ+ KY +L P+GLLQ LPI  +VWEDIS+DF+EGLPKSE +D ILVVVDRL+KYAHFI L+HPFGAK +AAVF++EI+ LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        ++VSDRD +FT +FW EL+RL GT L  ST YHPQTDGQTEV NRG++T LRCF  + PK+WA +L WAE  YN++ H+A  MTP +ALYGR PPS+L +
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+    ++  +KERD ++ ILK N+LKAQ   KH                                   KLA RF GP+ ++AR+G VAY L LP +
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPE-SATWEQVTLIQE
        S IH  FHVS L+  VGS+     +P  L A+  ++      +GVR    +    EVLI W  G PE  +TWE V +IQE
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPE-SATWEQVTLIQE

A0A2I0VBL5 Uncharacterized protein1.2e-9649.33Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M   +   VA C VCQ+ KY+++TP GLLQ L + ++VWE++SMDFI+GLP+SE + VILVVVDRLSKYAHFIPL HP+ A  VA+ F+RE+I LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        +IVSDRD +F S FW EL+RL GT L+RST YHPQTDGQTEVVNR ++TYLRCF   TP+ WAKWL+WAE  YNT+ H+A+ MTP + LYGR PP ++ +
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+ V+ V+  ++ERD +L  LK  LL+AQ   K                                  + KLAPR+ GP+ ++ +IG VAY L LP  
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNL-EVLICWSDGTPESATWE
        + IHPVFHVS LRK +G +  +  +P  L  +L + +  +E+ GV   R+K DN  EVLI W +     ATWE
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNL-EVLICWSDGTPESATWE

A0A2I0VWY1 Putative mitochondrial protein1.1e-9751.19Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  I   VA+C  CQ+ K++++ P GLLQ L + ++VWE+I+MDFI+GLPKSE Y VI VVVDRLSKYAHFIPL HP+ A  VA  F+REI+ LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        SIVSDRD +F S FW EL+R+ GT L+RST YHPQTDGQTEVVNR ++TYLRCF   TPKQWAKWLAWAE  YNT+ H+AT MTP + LYGR PP ++ Y
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+ V+ VD  +KERD +L  LK +LL+AQ   K                                  + KLA R+ GPF +  +IG VAY L LP  
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPESATWEQVTLI
        + IHPVFHVS LRKVVG +     +P  L  D+ + L  + V GVR   EK +  EV I WS      ATWE +  I
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDGTPESATWEQVTLI

A0A2U1PZV9 Ty3/gypsy retrotransposon protein2.7e-10149.74Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  I   V+EC VCQ+ KY +L P+GLLQ L + ++VW++++MDFI+GLP SE + VILVVVDRLSKYAHF+PL HP+ AK +AA FMRE+I LHG P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        ++V+DRD +F S FW+E+++  GT L+RST YHPQTDGQTEVVNR ++TYLRCF+   PKQW++WL+WAE  YNT+ HT++  TP + LYGR PP ++PY
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE
           S+   EVD  ++ERD +L  LK NLLKAQ   K                                  + KLAPR+ GPF ++ +IG VAY L LP+ 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFK----------------------------------HPKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVR--KTREKWDNLEVLICWSDGTPESATWEQVTLIQ
        + IHPVFHVS L+KVVG        PK+L+ D+ M +   EVLGVR  K+  K D  EVLI W +     +TWE + LI+
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVR--KTREKWDNLEVLICWSDGTPESATWEQVTLIQ

J3SDF5 Ty3/gypsy retrotransposon protein1.2e-9648.94Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        M+  +  YV +C +CQQ K     P GLLQ LPI   VWEDISMDFIEGLP S+  D ILV+VDRLSKYAHF+ L HPF A +VA +F++E++ LHG P 
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
        SIVSDRD IF SLFW+EL+RL GT L+RS+ YHPQTDGQTE+VNR ++TYLRCF    P+ WAKWL WAE SYNT+ HT+T M+P + LYGR PP ++  
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE
         K  + V  ++ ++++RD I+  L+ NL++AQ   KH                                   KLAPRF GPF ++ RIG  AY L LP  
Subjt:  VKESSLVNEVDHLMKERDGILGILKANLLKAQHHFKH----------------------------------PKLAPRFIGPFVIVARIGPVAYHLALPKE

Query:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTRE-KWDNLEVLICWSDGTPESATWEQVTLI
        S IHPVFHVS+L+KVVG+   L  IP  +  D+ + +   E+L VR+ R+ K    E LI W       ATWE ++ I
Subjt:  SLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTRE-KWDNLEVLICWSDGTPESATWEQVTLI

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.5e-4333.87Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        ++  I+ YV  C  CQ  K  +  P G LQ +P  +R WE +SMDFI  LP+S  Y+ + VVVDR SK A  +P      A+  A +F + +I   G P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
         I++D DHIFTS  W++        ++ S  Y PQTDGQTE  N+ V+  LRC     P  W   ++  + SYN  +H+AT MTP E ++ R  P++ P 
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES
        ++  S  ++ D   +E   +   +K +L    +K + +F                           K  KLAP F GPF ++ + GP  Y L LP   + 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES

Query:  LIHPVFHVSILRK
        +    FHVS L K
Subjt:  LIHPVFHVSILRK

P0CT35 Transposon Tf2-2 polyprotein2.5e-4333.87Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        ++  I+ YV  C  CQ  K  +  P G LQ +P  +R WE +SMDFI  LP+S  Y+ + VVVDR SK A  +P      A+  A +F + +I   G P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
         I++D DHIFTS  W++        ++ S  Y PQTDGQTE  N+ V+  LRC     P  W   ++  + SYN  +H+AT MTP E ++ R  P++ P 
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES
        ++  S  ++ D   +E   +   +K +L    +K + +F                           K  KLAP F GPF ++ + GP  Y L LP   + 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES

Query:  LIHPVFHVSILRK
        +    FHVS L K
Subjt:  LIHPVFHVSILRK

P0CT36 Transposon Tf2-3 polyprotein2.5e-4333.87Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        ++  I+ YV  C  CQ  K  +  P G LQ +P  +R WE +SMDFI  LP+S  Y+ + VVVDR SK A  +P      A+  A +F + +I   G P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
         I++D DHIFTS  W++        ++ S  Y PQTDGQTE  N+ V+  LRC     P  W   ++  + SYN  +H+AT MTP E ++ R  P++ P 
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES
        ++  S  ++ D   +E   +   +K +L    +K + +F                           K  KLAP F GPF ++ + GP  Y L LP   + 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES

Query:  LIHPVFHVSILRK
        +    FHVS L K
Subjt:  LIHPVFHVSILRK

P0CT41 Transposon Tf2-12 polyprotein2.5e-4333.87Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        ++  I+ YV  C  CQ  K  +  P G LQ +P  +R WE +SMDFI  LP+S  Y+ + VVVDR SK A  +P      A+  A +F + +I   G P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
         I++D DHIFTS  W++        ++ S  Y PQTDGQTE  N+ V+  LRC     P  W   ++  + SYN  +H+AT MTP E ++ R  P++ P 
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES
        ++  S  ++ D   +E   +   +K +L    +K + +F                           K  KLAP F GPF ++ + GP  Y L LP   + 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES

Query:  LIHPVFHVSILRK
        +    FHVS L K
Subjt:  LIHPVFHVSILRK

Q9UR07 Transposon Tf2-11 polyprotein2.5e-4333.87Show/hide
Query:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR
        ++  I+ YV  C  CQ  K  +  P G LQ +P  +R WE +SMDFI  LP+S  Y+ + VVVDR SK A  +P      A+  A +F + +I   G P+
Subjt:  MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPR

Query:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY
         I++D DHIFTS  W++        ++ S  Y PQTDGQTE  N+ V+  LRC     P  W   ++  + SYN  +H+AT MTP E ++ R  P++ P 
Subjt:  SIVSDRDHIFTSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPY

Query:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES
        ++  S  ++ D   +E   +   +K +L    +K + +F                           K  KLAP F GPF ++ + GP  Y L LP   + 
Subjt:  VKESSLVNEVDHLMKERDGILGILKANL----LKAQHHF---------------------------KHPKLAPRFIGPFVIVARIGPVAYHLALPK--ES

Query:  LIHPVFHVSILRK
        +    FHVS L K
Subjt:  LIHPVFHVSILRK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCACACATCCGCACATATGTTGCCGAATGTTCGGTTTGTCAACAAGCCAAATATTTGTCATTAACTCCAGCCGGTCTTCTTCAAGCATTACCCATTCTAGACCG
TGTATGGGAGGATATTAGTATGGATTTTATTGAGGGTCTCCCTAAATCTGAGTGTTATGATGTCATATTGGTAGTTGTGGATAGACTATCCAAGTATGCACATTTCATTC
CTTTGGAGCATCCTTTTGGTGCAAAAGTTGTAGCTGCTGTTTTTATGCGGGAAATCATTTGTTTGCATGGATGCCCCCGAAGTATAGTGTCGGATCGTGATCATATTTTC
ACAAGTCTATTTTGGGAGGAGTTGTGGCGGTTGTTGGGAACTCAGTTAAGACGAAGCACCACCTACCATCCCCAAACAGATGGTCAAACCGAAGTTGTCAATCGAGGGGT
GGATACGTATCTACGATGTTTTGCTATGAACACACCTAAACAGTGGGCTAAATGGCTAGCTTGGGCTGAATTGAGCTATAATACAACTGTCCATACAGCCACATTGATGA
CCCCCTTGGAGGCTCTCTATGGTCGGCCACCTCCCTCTATATTACCATACGTGAAAGAGTCGAGCTTGGTGAATGAAGTAGATCATTTGATGAAGGAAAGAGATGGAATT
CTGGGAATTTTGAAGGCCAATTTACTGAAGGCACAACACCATTTTAAGCACCCCAAATTGGCCCCAAGATTCATTGGCCCATTTGTCATTGTGGCACGAATTGGTCCGGT
TGCATATCATTTGGCTCTTCCCAAGGAGTCGCTTATTCACCCTGTCTTTCATGTTTCGATTCTTCGAAAGGTCGTAGGTTCAAACAAGCCTCTATTTCCAATTCCAAAAG
ATTTGGCTGCTGATTTGTCAATGCAATTGTCTTCGGTAGAGGTGTTGGGAGTTCGCAAAACCAGAGAAAAATGGGACAACTTAGAAGTTTTGATTTGCTGGAGTGACGGT
ACACCTGAAAGTGCTACATGGGAACAAGTCACTCTTATTCAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCACACATCCGCACATATGTTGCCGAATGTTCGGTTTGTCAACAAGCCAAATATTTGTCATTAACTCCAGCCGGTCTTCTTCAAGCATTACCCATTCTAGACCG
TGTATGGGAGGATATTAGTATGGATTTTATTGAGGGTCTCCCTAAATCTGAGTGTTATGATGTCATATTGGTAGTTGTGGATAGACTATCCAAGTATGCACATTTCATTC
CTTTGGAGCATCCTTTTGGTGCAAAAGTTGTAGCTGCTGTTTTTATGCGGGAAATCATTTGTTTGCATGGATGCCCCCGAAGTATAGTGTCGGATCGTGATCATATTTTC
ACAAGTCTATTTTGGGAGGAGTTGTGGCGGTTGTTGGGAACTCAGTTAAGACGAAGCACCACCTACCATCCCCAAACAGATGGTCAAACCGAAGTTGTCAATCGAGGGGT
GGATACGTATCTACGATGTTTTGCTATGAACACACCTAAACAGTGGGCTAAATGGCTAGCTTGGGCTGAATTGAGCTATAATACAACTGTCCATACAGCCACATTGATGA
CCCCCTTGGAGGCTCTCTATGGTCGGCCACCTCCCTCTATATTACCATACGTGAAAGAGTCGAGCTTGGTGAATGAAGTAGATCATTTGATGAAGGAAAGAGATGGAATT
CTGGGAATTTTGAAGGCCAATTTACTGAAGGCACAACACCATTTTAAGCACCCCAAATTGGCCCCAAGATTCATTGGCCCATTTGTCATTGTGGCACGAATTGGTCCGGT
TGCATATCATTTGGCTCTTCCCAAGGAGTCGCTTATTCACCCTGTCTTTCATGTTTCGATTCTTCGAAAGGTCGTAGGTTCAAACAAGCCTCTATTTCCAATTCCAAAAG
ATTTGGCTGCTGATTTGTCAATGCAATTGTCTTCGGTAGAGGTGTTGGGAGTTCGCAAAACCAGAGAAAAATGGGACAACTTAGAAGTTTTGATTTGCTGGAGTGACGGT
ACACCTGAAAGTGCTACATGGGAACAAGTCACTCTTATTCAAGAATAG
Protein sequenceShow/hide protein sequence
MKAHIRTYVAECSVCQQAKYLSLTPAGLLQALPILDRVWEDISMDFIEGLPKSECYDVILVVVDRLSKYAHFIPLEHPFGAKVVAAVFMREIICLHGCPRSIVSDRDHIF
TSLFWEELWRLLGTQLRRSTTYHPQTDGQTEVVNRGVDTYLRCFAMNTPKQWAKWLAWAELSYNTTVHTATLMTPLEALYGRPPPSILPYVKESSLVNEVDHLMKERDGI
LGILKANLLKAQHHFKHPKLAPRFIGPFVIVARIGPVAYHLALPKESLIHPVFHVSILRKVVGSNKPLFPIPKDLAADLSMQLSSVEVLGVRKTREKWDNLEVLICWSDG
TPESATWEQVTLIQE