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CSPI03G23940 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G23940
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationChr3:21023463..21023996
RNA-Seq ExpressionCSPI03G23940
SyntenyCSPI03G23940
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0030036 - actin cytoskeleton organization (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042076.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.7e-8384.48Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP GLLTPLDI SRIW+DISMDFIEGLPK+ G+EVIFVVV+RFSKY HFL LKHPFDAKTV ++FVKEVVRLHGFPQSIV +RDKIF+S+FWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNR+TAYHPQTDGQT VVNRSVE YLRCFCGERPK+W KWI  AEYWYNTTYQR+LGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

KAA0060163.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]7.2e-8483.33Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+D  SKYAHFL LK+PFDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNRST +HPQTDGQTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

KAA0066077.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]1.4e-8483.91Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP GLLTPL+IPSRIW+ ISMDFIEGLPK+ G++VI VVVDRFSKYAHFL LKHPFDA+ VA+VFVKEVVRLHGFP+SIVS+RDK+F+S+FWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNRST YHPQTDGQTEVV+RSVE YLRCFCGERPKEW+KWI WAEYWYN TYQ+SLGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

TYK04251.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.4e-8583.91Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+DR SKYAHFL LK+PFDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNRST +HPQTDGQTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

TYK18018.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.7e-8384.48Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP GLLTPLDI SRIW+DISMDFIEGLPK+ G+EVIFVVV+RFSKY HFL LKHPFDAKTV ++FVKEVVRLHGFPQSIV +RDKIF+S+FWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNR+TAYHPQTDGQT VVNRSVE YLRCFCGERPK+W KWI  AEYWYNTTYQR+LGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

TrEMBL top hitse value%identityAlignment
A0A5A7T0V2 Protein SDA1-like protein isoform X21.3e-8387.35Show/hide
Query:  GLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKL
        GLLTPL+IPSRIW+DIS DFIEGLPK+ G+EVI VVVDRFSKY HFL LKHPFDAKTVA+VFVKEVVRLHGFPQ IVS+RDKIF+S+FWKELFRL GTKL
Subjt:  GLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKL

Query:  NRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        NRSTAYHPQTDGQTEV+N SVE YLRCFCGERPKEW+KWI W EYWYNTTYQRSLGVSPFQAVYGR
Subjt:  NRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

A0A5A7UW14 Transposon Ty3-G Gag-Pol polyprotein3.5e-8483.33Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+D  SKYAHFL LK+PFDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNRST +HPQTDGQTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

A0A5A7VG68 Transposon Tf2-9 polyprotein7.0e-8583.91Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP GLLTPL+IPSRIW+ ISMDFIEGLPK+ G++VI VVVDRFSKYAHFL LKHPFDA+ VA+VFVKEVVRLHGFP+SIVS+RDK+F+S+FWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNRST YHPQTDGQTEVV+RSVE YLRCFCGERPKEW+KWI WAEYWYN TYQ+SLGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

A0A5D3BX34 Transposon Ty3-I Gag-Pol polyprotein4.1e-8583.91Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP  LLTPL+IP+RIW+DISMDFIEGLPK+ G+EVIFVV+DR SKYAHFL LK+PFDAK VA++FVKEVVRLHGFP+SIVS+RDKIF+SNFWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNRST +HPQTDGQTEVVNRS+E YLRCFCGERP+EW+KWI WAEYWYNTTYQRSLGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

A0A5D3D331 Retrotransposable element Tf21.3e-8384.48Show/hide
Query:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL
        K+L+LSP GLLTPLDI SRIW+DISMDFIEGLPK+ G+EVIFVVV+RFSKY HFL LKHPFDAKTV ++FVKEVVRLHGFPQSIV +RDKIF+S+FWKEL
Subjt:  KTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKEL

Query:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR
        FRL GTKLNR+TAYHPQTDGQT VVNRSVE YLRCFCGERPK+W KWI  AEYWYNTTYQR+LGVSPFQAVYGR
Subjt:  FRLVGTKLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.1e-3039.16Show/hide
Query:  PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGT
        P G L P+    R WE +SMDFI  LP+S GY  +FVVVDRFSK A  +       A+  A +F + V+   G P+ I+++ D IF S  WK+       
Subjt:  PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGT

Query:  KLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY
         +  S  Y PQTDGQTE  N++VE  LRC C   P  W+  I   +  YN     +  ++PF+ V+
Subjt:  KLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY

P0CT41 Transposon Tf2-12 polyprotein2.1e-3039.16Show/hide
Query:  PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGT
        P G L P+    R WE +SMDFI  LP+S GY  +FVVVDRFSK A  +       A+  A +F + V+   G P+ I+++ D IF S  WK+       
Subjt:  PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGT

Query:  KLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY
         +  S  Y PQTDGQTE  N++VE  LRC C   P  W+  I   +  YN     +  ++PF+ V+
Subjt:  KLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.5e-3141.57Show/hide
Query:  GLLTPLDIPSRIWEDISMDFIEGL-PKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTK
        GLL PL I    W DISMDF+ GL P S    +I VVVDRFSK AHF+  +   DA  + D+  + +   HGFP++I S+RD    ++ ++EL + +G K
Subjt:  GLLTPLDIPSRIWEDISMDFIEGL-PKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTK

Query:  LNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYG
           S+A HPQTDGQ+E   +++   LR +     + W  ++P  E+ YN+T  R+LG SPF+   G
Subjt:  LNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYG

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.9e-3141.57Show/hide
Query:  GLLTPLDIPSRIWEDISMDFIEGL-PKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTK
        GLL PL I    W DISMDF+ GL P S    +I VVVDRFSK AHF+  +   DA  + D+  + +   HGFP++I S+RD    ++ ++EL + +G K
Subjt:  GLLTPLDIPSRIWEDISMDFIEGL-PKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTK

Query:  LNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYG
           S+A HPQTDGQ+E   +++   LR +     + W  ++P  E+ YN+T  R+LG SPF+   G
Subjt:  LNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYG

Q9UR07 Transposon Tf2-11 polyprotein2.1e-3039.16Show/hide
Query:  PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGT
        P G L P+    R WE +SMDFI  LP+S GY  +FVVVDRFSK A  +       A+  A +F + V+   G P+ I+++ D IF S  WK+       
Subjt:  PTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGT

Query:  KLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY
         +  S  Y PQTDGQTE  N++VE  LRC C   P  W+  I   +  YN     +  ++PF+ V+
Subjt:  KLNRSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCTTAGCCCTCTCACCGACGGGTTTATTGACTCCCTTGGATATCCCTAGTAGAATATGGGAGGACATATCTATGGATTTCATCGAAGGCCTGCCCAAGTCCGG
TGGATATGAGGTGATTTTTGTGGTGGTTGATCGTTTTAGCAAGTATGCCCATTTTCTGGGGCTTAAACATCCGTTTGATGCCAAGACAGTAGCAGACGTATTTGTGAAAG
AAGTTGTAAGATTACACGGTTTTCCACAGTCAATAGTTTCTAACCGTGATAAGATCTTTATGAGCAATTTTTGGAAGGAGTTGTTTCGTTTGGTAGGCACAAAACTGAAT
CGGAGTACCGCATATCACCCTCAAACGGATGGCCAGACCGAGGTTGTTAACAGGTCAGTAGAGATTTACTTAAGGTGCTTTTGTGGAGAACGTCCAAAGGAATGGATGAA
GTGGATTCCTTGGGCTGAATATTGGTATAATACCACATATCAGCGTTCCTTAGGAGTATCCCCCTTTCAAGCAGTATACGGACGTGCCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCTTAGCCCTCTCACCGACGGGTTTATTGACTCCCTTGGATATCCCTAGTAGAATATGGGAGGACATATCTATGGATTTCATCGAAGGCCTGCCCAAGTCCGG
TGGATATGAGGTGATTTTTGTGGTGGTTGATCGTTTTAGCAAGTATGCCCATTTTCTGGGGCTTAAACATCCGTTTGATGCCAAGACAGTAGCAGACGTATTTGTGAAAG
AAGTTGTAAGATTACACGGTTTTCCACAGTCAATAGTTTCTAACCGTGATAAGATCTTTATGAGCAATTTTTGGAAGGAGTTGTTTCGTTTGGTAGGCACAAAACTGAAT
CGGAGTACCGCATATCACCCTCAAACGGATGGCCAGACCGAGGTTGTTAACAGGTCAGTAGAGATTTACTTAAGGTGCTTTTGTGGAGAACGTCCAAAGGAATGGATGAA
GTGGATTCCTTGGGCTGAATATTGGTATAATACCACATATCAGCGTTCCTTAGGAGTATCCCCCTTTCAAGCAGTATACGGACGTGCCTGTTAA
Protein sequenceShow/hide protein sequence
MKTLALSPTGLLTPLDIPSRIWEDISMDFIEGLPKSGGYEVIFVVVDRFSKYAHFLGLKHPFDAKTVADVFVKEVVRLHGFPQSIVSNRDKIFMSNFWKELFRLVGTKLN
RSTAYHPQTDGQTEVVNRSVEIYLRCFCGERPKEWMKWIPWAEYWYNTTYQRSLGVSPFQAVYGRAC