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CSPI03G24220 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24220
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionZinc-binding ribosomal protein family protein
Genome locationChr3:21320099..21323141
RNA-Seq ExpressionCSPI03G24220
SyntenyCSPI03G24220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650732.1 hypothetical protein Csa_023396 [Cucumis sativus]8.3e-9993Show/hide
Query:  MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQ--------------AHSQAQKTQIFPHQPDPPEKSRVGQSKTG
        MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQ              AHSQAQKTQIFPHQPDPPEKSRVGQSKTG
Subjt:  MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQ--------------AHSQAQKTQIFPHQPDPPEKSRVGQSKTG

Query:  PEFLGTLNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLELGG
        PEFLGTLNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLELGG
Subjt:  PEFLGTLNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLELGG
KAF1883069.1 hypothetical protein Lal_00003251 [Lupinus albus]2.4e-0558.33Show/hide
Query:  VREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLEL
        VRE+ VSV+GGTRPT SV GVA  AS  +RVDAP     L  S +ITG  R S  RP EL
Subjt:  VREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLEL
PPD96169.1 hypothetical protein GOBAR_DD06803 [Gossypium barbadense]4.5e-0466.67Show/hide
Query:  REREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRR
        RE  V VK GTRPTLS LGVA VASISRR  A PV   LLV  HI  A RR
Subjt:  REREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRR
TrEMBL top hitse value%identityAlignment
A0A6A5ND91 Uncharacterized protein1.2e-0558.33Show/hide
Query:  VREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLEL
        VRE+ VSV+GGTRPT SV GVA  AS  +RVDAP     L  S +ITG  R S  RP EL
Subjt:  VREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLEL
A0A7J0G090 Zinc-binding ribosomal protein family protein6.4e-0439.53Show/hide
Query:  LNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSE
        LN ++++S+    LL    R   V S+++ +W +E+  SV+GGTRPT S  GVA  A ISRR DA  V F L    H  G  +  +
Subjt:  LNPRNINSAAYFLLLFGRYRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGGAATATTCAATCACAAGATTCTCCTGGCCTTGAAGATGCCGGAGAAGGCGTGGGAACAGCTTGCTTTATGCTGCTGTCCTGTAGCGGACTGTGCTTCACTCG
CAGAGCTGGGAACGCGCAAGAAGGCTACTGGGTCATTGCCGCTGTGGTAGGCAAAAACCAGGCCCATTCTCAGGCACAAAAGACCCAAATCTTTCCACACCAACCCGACC
CACCAGAGAAGTCTCGGGTAGGTCAAAGCAAAACGGGTCCGGAATTTCTTGGAACCCTAAACCCTCGCAATATAAACTCTGCCGCCTACTTCCTCCTTCTCTTTGGACGG
TACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGT
CGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAAC
TGGGCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGGAATATTCAATCACAAGATTCTCCTGGCCTTGAAGATGCCGGAGAAGGCGTGGGAACAGCTTGCTTTATGCTGCTGTCCTGTAGCGGACTGTGCTTCACTCG
CAGAGCTGGGAACGCGCAAGAAGGCTACTGGGTCATTGCCGCTGTGGTAGGCAAAAACCAGGCCCATTCTCAGGCACAAAAGACCCAAATCTTTCCACACCAACCCGACC
CACCAGAGAAGTCTCGGGTAGGTCAAAGCAAAACGGGTCCGGAATTTCTTGGAACCCTAAACCCTCGCAATATAAACTCTGCCGCCTACTTCCTCCTTCTCTTTGGACGG
TACAGGAATCCAAAGGTTTCATCCTCCAATTCGATTAAATGGGTAAGGGAACGGGAAGTTTCGGTAAAAGGAGGAACAAGACCCACACTCTCTGTGTTAGGTGTGGCCGT
CGTAGCTTCCATCTCCAGAAGAGTCGATGCTCCGCCTGTGCATTTCCAGCTGCTCGTAAGCGTACATATAACTGGAGCGTCAAGGCGATCCGAAGGAAGACCACTGGAAC
TGGGCGGATGAGATATTTGCGCCATGTTCCTCGCAGATTCAAGAGTGGTTTCAGAGAAGGTACTGAAGCAGCGCCAAGGAGCAAAGGAGCCTCATCATCAGCCTAAGACA
TTGAAGGTTAATTGTGGCACAACTTGGTACCTTATATAGCTTCTAGGAGGATTTTATCATTTTTGGGACTAGAGTTTATAAGAATTTTGTTTGATGATGTTATTGCCTGC
AATACTGAAGCTTGTTTTTATTTCTTACTCTTTTGTTTATGGAATTTCTGATAATTGTTTTCAGACCACTTTCACCTTTGGTTAATCTATGTCTTGAGTTATATACTTCT
AAGTTCCAACCATGTTAGAAGGTATTGCTGGTAGATATTGTTACTCTGAATGCCAGGGTGGAAACTATTAGTGAGAAATTTGCGTGTTGAGATCATGCGTTGATGTTTGA
GTTGTTTCTTATTCTTGGTCGCAGC
Protein sequenceShow/hide protein sequence
MCWNIQSQDSPGLEDAGEGVGTACFMLLSCSGLCFTRRAGNAQEGYWVIAAVVGKNQAHSQAQKTQIFPHQPDPPEKSRVGQSKTGPEFLGTLNPRNINSAAYFLLLFGR
YRNPKVSSSNSIKWVREREVSVKGGTRPTLSVLGVAVVASISRRVDAPPVHFQLLVSVHITGASRRSEGRPLELGG