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CSPI03G24430 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24430
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionnuclear intron maturase 3, mitochondrial
Genome locationChr3:21488576..21488854
RNA-Seq ExpressionCSPI03G24430
SyntenyCSPI03G24430
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0005622 - intracellular (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033971.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]5.5e-1957.66Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE
        MELQAV PSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  K F++ G  +                    VQDFFESSED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHRV SAGDFL
Subjt:  WHRVRSAGDFL
KAE8650134.1 hypothetical protein Csa_009531 [Cucumis sativus]1.1e-1957.66Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE
        MEL+AVPPSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  K F++ G  +                    VQDFFESSED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHRV SAGDFL
Subjt:  WHRVRSAGDFL
XP_008463418.1 PREDICTED: uncharacterized protein LOC103501588 [Cucumis melo]3.2e-1957.66Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE
        MELQAV PSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  K F++ G  +                    VQDFFESSED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHRV SAGDFL
Subjt:  WHRVRSAGDFL
XP_031738720.1 nuclear intron maturase 3, mitochondrial [Cucumis sativus]1.1e-1957.66Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE
        MEL+AVPPSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  K F++ G  +                    VQDFFESSED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHRV SAGDFL
Subjt:  WHRVRSAGDFL
XP_038904122.1 nuclear intron maturase 3, mitochondrial [Benincasa hispida]4.7e-1854.05Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKY----------------------FQKLGRRRVQDFFESSEDRAE
        MELQAV PSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH +                      F+K     VQDFF+S ED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKY----------------------FQKLGRRRVQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHR  SAGDFL
Subjt:  WHRVRSAGDFL
TrEMBL top hitse value%identityAlignment
A0A0A0LDE9 Uncharacterized protein1.3e-3798.82Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGRRRVQDFFESSEDRAEWHRVRSA
        MELQAVPPSVLHPPMSEKAIRARKKYTRQEE RAIELRNSSKLVGLNLNFKLRSHKYFQKLGRRRVQDFFESSEDRAEWHRVRSA
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGRRRVQDFFESSEDRAEWHRVRSA
A0A1S4E4Y1 uncharacterized protein LOC1035015881.6e-1957.66Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE
        MELQAV PSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  K F++ G  +                    VQDFFESSED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHRV SAGDFL
Subjt:  WHRVRSAGDFL
A0A5A7SWY5 RNA-directed DNA polymerase2.7e-1957.66Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE
        MELQAV PSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  K F++ G  +                    VQDFFESSED AE
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH--KYFQKLGRRR--------------------VQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WHRV SAGDFL
Subjt:  WHRVRSAGDFL
A0A6J1FV64 nuclear intron maturase 3, mitochondrial5.5e-1754.46Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGR-----------------------RRVQDFFESSEDRA
        MELQAV PSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  F+KL R                         V+DFFES ED  
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGR-----------------------RRVQDFFESSEDRA

Query:  EWHRVRSAGDFL
        EWHR  SAGDFL
Subjt:  EWHRVRSAGDFL
A0A6J1ILC2 nuclear intron maturase 3, mitochondrial3.8e-1855.36Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGR-----------------------RRVQDFFESSEDRA
        MELQAVPPSVLHPPMSEKAIRARKKY RQ+E RAIELRN+ +     L  K+ SH  F+KL R                         V+DFFES ED  
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGR-----------------------RRVQDFFESSEDRA

Query:  EWHRVRSAGDFL
        EWHR  SAGDFL
Subjt:  EWHRVRSAGDFL
SwissProt top hitse value%identityAlignment
Q9LZA5 Nuclear intron maturase 3, mitochondrial8.0e-1341.44Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH----------------------KYFQKLGRRRVQDFFESSEDRAE
        M LQAVPPSVL PP SEKA+RA KKY RQ++ R +ELRN+ +     L  K+  H                        FQ  G   +QDF  S E+R +
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH----------------------KYFQKLGRRRVQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WH + + GDFL
Subjt:  WHRVRSAGDFL
Arabidopsis top hitse value%identityAlignment
AT5G04050.1 RNA-directed DNA polymerase (reverse transcriptase)5.7e-1441.44Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH----------------------KYFQKLGRRRVQDFFESSEDRAE
        M LQAVPPSVL PP SEKA+RA KKY RQ++ R +ELRN+ +     L  K+  H                        FQ  G   +QDF  S E+R +
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH----------------------KYFQKLGRRRVQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WH + + GDFL
Subjt:  WHRVRSAGDFL
AT5G04050.2 RNA-directed DNA polymerase (reverse transcriptase)5.7e-1441.44Show/hide
Query:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH----------------------KYFQKLGRRRVQDFFESSEDRAE
        M LQAVPPSVL PP SEKA+RA KKY RQ++ R +ELRN+ +     L  K+  H                        FQ  G   +QDF  S E+R +
Subjt:  MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSH----------------------KYFQKLGRRRVQDFFESSEDRAE

Query:  WHRVRSAGDFL
        WH + + GDFL
Subjt:  WHRVRSAGDFL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTACAGGCTGTACCACCTTCAGTTCTACATCCACCAATGTCAGAGAAGGCAATCAGGGCAAGGAAGAAGTACACTAGACAGGAGGAATTTAGAGCAATAGAATT
GAGAAATTCAAGCAAACTGGTGGGTTTAAATCTGAATTTCAAATTGAGAAGTCACAAGTATTTTCAGAAATTGGGCCGACGAAGGGTGCAAGATTTCTTTGAGTCCTCTG
AAGATCGTGCAGAGTGGCACCGTGTGCGGTCAGCAGGTGATTTTTTGTATAGATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTACAGGCTGTACCACCTTCAGTTCTACATCCACCAATGTCAGAGAAGGCAATCAGGGCAAGGAAGAAGTACACTAGACAGGAGGAATTTAGAGCAATAGAATT
GAGAAATTCAAGCAAACTGGTGGGTTTAAATCTGAATTTCAAATTGAGAAGTCACAAGTATTTTCAGAAATTGGGCCGACGAAGGGTGCAAGATTTCTTTGAGTCCTCTG
AAGATCGTGCAGAGTGGCACCGTGTGCGGTCAGCAGGTGATTTTTTGTATAGATCATAA
Protein sequenceShow/hide protein sequence
MELQAVPPSVLHPPMSEKAIRARKKYTRQEEFRAIELRNSSKLVGLNLNFKLRSHKYFQKLGRRRVQDFFESSEDRAEWHRVRSAGDFLYRS