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CSPI03G24540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon gag protein
Genome locationChr3:21655140..21655370
RNA-Seq ExpressionCSPI03G24540
SyntenyCSPI03G24540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062079.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-0652.38Show/hide
Query:  MKWENQAQYDERPSYTT----SSSQDVSLEDMVKSLATNSLKFQQDLHQLKQETKLFQQEART
        +KWENQ  Y +R SYT     +SSQ +SLED VK+LATNSL FQ +    ++E K+FQQ+ +T
Subjt:  MKWENQAQYDERPSYTT----SSSQDVSLEDMVKSLATNSLKFQQDLHQLKQETKLFQQEART
TrEMBL top hitse value%identityAlignment
A0A5A7V8R3 Retrotransposon gag protein1.3e-0652.38Show/hide
Query:  MKWENQAQYDERPSYTT----SSSQDVSLEDMVKSLATNSLKFQQDLHQLKQETKLFQQEART
        +KWENQ  Y +R SYT     +SSQ +SLED VK+LATNSL FQ +    ++E K+FQQ+ +T
Subjt:  MKWENQAQYDERPSYTT----SSSQDVSLEDMVKSLATNSLKFQQDLHQLKQETKLFQQEART
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGGGAAAATCAAGCCCAATATGATGAAAGGCCTTCCTACACCACCTCTTCTTCTCAAGATGTGTCTCTTGAAGATATGGTTAAGTCTTTAGCAACTAATTCTCT
TAAGTTTCAACAAGACCTTCACCAACTCAAACAAGAAACCAAGTTGTTTCAACAAGAAGCAAGGACCGGTCTCACAAATATTGACAACAAATTACAAAATTGGCTAGAAA
ATAAGCAAACT
mRNA sequenceShow/hide mRNA sequence
ATGAAATGGGAAAATCAAGCCCAATATGATGAAAGGCCTTCCTACACCACCTCTTCTTCTCAAGATGTGTCTCTTGAAGATATGGTTAAGTCTTTAGCAACTAATTCTCT
TAAGTTTCAACAAGACCTTCACCAACTCAAACAAGAAACCAAGTTGTTTCAACAAGAAGCAAGGACCGGTCTCACAAATATTGACAACAAATTACAAAATTGGCTAGAAA
ATAAGCAAACT
Protein sequenceShow/hide protein sequence
MKWENQAQYDERPSYTTSSSQDVSLEDMVKSLATNSLKFQQDLHQLKQETKLFQQEARTGLTNIDNKLQNWLENKQT