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CSPI03G24570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr3:21670167..21670424
RNA-Seq ExpressionCSPI03G24570
SyntenyCSPI03G24570
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033331.1 uncharacterized protein E6C27_scaffold845G001500 [Cucumis melo var. makuwa]1.1e-1157.65Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS
        MLYLVEV DSI +LE RL EI K  D IDAV+GR+  LP QEL+               V YE EDSSSG  AHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS

KAA0062302.1 uncharacterized protein E6C27_scaffold154G00490 [Cucumis melo var. makuwa]1.1e-1159.04Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELI-------GNV----AYEREDSSSGTVAHMEERVIELDNS
        MLYLVEVLDSI FLE RL EI +  D+IDA+ GR+  LP QEL+       GNV    ++ER DSS G+VAH+EERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELI-------GNV----AYEREDSSSGTVAHMEERVIELDNS

TYK18539.1 uncharacterized protein E5676_scaffold119G00390 [Cucumis melo var. makuwa]6.7e-1259.04Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIGNV-----------AYEREDSSSGTVAHMEERVIELDNS
        MLYLVEVLDSIC+LE RL EIF+ AD ID V+GR+  L  QEL+  V             E EDSSS  VAHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIGNV-----------AYEREDSSSGTVAHMEERVIELDNS

TYK21576.1 uncharacterized protein E5676_scaffold275G00750 [Cucumis melo var. makuwa]1.1e-1157.65Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS
        MLYLVEV DSI +LE RL EI K  D IDAV+GR+  LP QEL+               V YE EDSSSG  AHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS

XP_031745591.1 uncharacterized protein LOC116406038 isoform X1 [Cucumis sativus]1.1e-1156.47Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQEL-------------IGNVAYEREDSSSGTVAHMEERVIELDNS
        ML+L EV DSI F+E+RL ++ K  DV+DAVSGRL+ LP  +L             I NV YER +SSSG+VA MEERVIELDNS
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQEL-------------IGNVAYEREDSSSGTVAHMEERVIELDNS

TrEMBL top hitse value%identityAlignment
A0A5A7SV46 Retrotrans_gag domain-containing protein5.5e-1257.65Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS
        MLYLVEV DSI +LE RL EI K  D IDAV+GR+  LP QEL+               V YE EDSSSG  AHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS

A0A5A7TL79 Senescence-specific cysteine protease sag397.2e-1254.12Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS
        MLYLV+V DSIC+LE RL EI +  D IDAV+GR+  LP +E +               V YER DSSSG  AHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS

A0A5D3D4R6 Uncharacterized protein3.2e-1259.04Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIGNV-----------AYEREDSSSGTVAHMEERVIELDNS
        MLYLVEVLDSIC+LE RL EIF+ AD ID V+GR+  L  QEL+  V             E EDSSS  VAHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIGNV-----------AYEREDSSSGTVAHMEERVIELDNS

A0A5D3DDD3 Retrotrans_gag domain-containing protein5.5e-1257.65Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS
        MLYLVEV DSI +LE RL EI K  D IDAV+GR+  LP QEL+               V YE EDSSSG  AHMEERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIG-------------NVAYEREDSSSGTVAHMEERVIELDNS

A0A5D3DTJ0 Asp_protease domain-containing protein5.5e-1259.04Show/hide
Query:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELI-------GNV----AYEREDSSSGTVAHMEERVIELDNS
        MLYLVEVLDSI FLE RL EI +  D+IDA+ GR+  LP QEL+       GNV    ++ER DSS G+VAH+EERV ELD+S
Subjt:  MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELI-------GNV----AYEREDSSSGTVAHMEERVIELDNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTATCTAGTGGAAGTTCTTGATTCCATCTGTTTCTTAGAAAAGCGGCTTTGTGAAATTTTCAAGACAGCCGATGTGATTGATGCGGTGTCTGGTCGTCTCAACAG
ATTACCCAGACAAGAATTAATTGGAAACGTCGCTTACGAGCGCGAGGACAGTTCGTCGGGCACTGTTGCCCATATGGAAGAACGAGTTATTGAGCTAGATAACTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTATCTAGTGGAAGTTCTTGATTCCATCTGTTTCTTAGAAAAGCGGCTTTGTGAAATTTTCAAGACAGCCGATGTGATTGATGCGGTGTCTGGTCGTCTCAACAG
ATTACCCAGACAAGAATTAATTGGAAACGTCGCTTACGAGCGCGAGGACAGTTCGTCGGGCACTGTTGCCCATATGGAAGAACGAGTTATTGAGCTAGATAACTCTTAA
Protein sequenceShow/hide protein sequence
MLYLVEVLDSICFLEKRLCEIFKTADVIDAVSGRLNRLPRQELIGNVAYEREDSSSGTVAHMEERVIELDNS