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CSPI03G24610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionrRNA intron-encoded homing endonuclease
Genome locationChr3:21709492..21709820
RNA-Seq ExpressionCSPI03G24610
SyntenyCSPI03G24610
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3441672.1 rRNA intron-encoded homing endonuclease [Gossypium australe]1.8e-4194.74Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MIN++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
KAB1212993.1 hypothetical protein CJ030_MR5G025804 [Morella rubra]1.3e-3984.4Show/hide
Query:  MINKNGRGHS--------------RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGR
        MIN+N RGHS              RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGR
Subjt:  MINKNGRGHS--------------RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGR

Query:  APPGVEPAA
        APPGVEPAA
Subjt:  APPGVEPAA
KAF1854471.1 hypothetical protein Lal_00046860 [Lupinus albus]2.6e-4093.68Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MIN++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
KEH17025.1 rRNA intron-encoded homing endonuclease, putative [Medicago truncatula]2.6e-4093.68Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MIN++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
THU64758.1 hypothetical protein C4D60_Mb01t29820 [Musa balbisiana]3.1e-4194.74Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MI ++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
TrEMBL top hitse value%identityAlignment
A0A072TTZ2 rRNA intron-encoded homing endonuclease, putative1.3e-4093.68Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MIN++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
A0A4S8JRQ3 Uncharacterized protein1.5e-4194.74Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MI ++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
A0A5B6TKV7 rRNA intron-encoded homing endonuclease8.8e-4294.74Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MIN++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
A0A6A1VJU8 Uncharacterized protein6.3e-4084.4Show/hide
Query:  MINKNGRGHS--------------RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGR
        MIN+N RGHS              RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGR
Subjt:  MINKNGRGHS--------------RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGR

Query:  APPGVEPAA
        APPGVEPAA
Subjt:  APPGVEPAA
A0A6A5P3K8 Uncharacterized protein1.3e-4093.68Show/hide
Query:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
        MIN++ RGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQG ADVA RTP APYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
Subjt:  MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAACAAGAACGGTCGGGGGCATTCACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATAC
CGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTA
TGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTAACAAGAACGGTCGGGGGCATTCACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATAC
CGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTA
TGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA
Protein sequenceShow/hide protein sequence
MINKNGRGHSRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA