; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G24620 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24620
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr3:21711884..21713827
RNA-Seq ExpressionCSPI03G24620
SyntenyCSPI03G24620
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.0e-10659.38Show/hide
Query:  IRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVI
        +RDG SWNI STLKILWLL   S SLWVAWVEAYILK +SL  +D GV RSWC RAILRKRD LK HV +EVG+G  CRVWLDP +QG PI++Q GERV+
Subjt:  IRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVI

Query:  YDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIK
        YDA SRR+ARL +F+G DG+W+W  VS++L+D+WDR+Q VRP  SV D WV VPG    FSI SA + IRP   RV W GLLWGGGN+PKHSF  WL IK
Subjt:  YDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIK

Query:  DRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------ERNLRL
        ++LGTRDRL RWDSS+P+S ILC G  ESRDHLFF CPFG ++WSR+L  M+SSHRIRYWG                                 E N RL
Subjt:  DRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------ERNLRL

Query:  HGGAVWEPMVIFQLIRSCIK
        HGG     ++IFQ I +CI+
Subjt:  HGGAVWEPMVIFQLIRSCIK

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]2.8e-12070.37Show/hide
Query:  VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLE-IDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQG
        VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRS+L  +D+GV    C   I  K   L    +  +    +C  W    IQG
Subjt:  VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLE-IDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQG

Query:  GPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNI
        G IIQQFGERVIYDA SRRDARLVDFM RDGDWRW LVSLDLMDIWD IQGVRPS SVED WV VPGS +SFSI SA E IRPHSSRVGWSGLLW  GNI
Subjt:  GPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNI

Query:  PKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------
        PKHSFY WLAI+DRLGTRDRLS+WD SIPLSC+LCGGNYESRDHLFF CPFGWEIWSRILLFMSSSHRI YWG                           
Subjt:  PKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------

Query:  ------ERNLRLHGGAVWEPMVIF
              ERN  LHGGAV EPM+ F
Subjt:  ------ERNLRLHGGAVWEPMVIF

XP_031737556.1 uncharacterized protein LOC116402448 [Cucumis sativus]6.5e-14199.16Show/hide
Query:  SLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWS
        SLWVAWVEAYILKGRSL EIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWS
Subjt:  SLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWS

Query:  LVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCG
        LVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCG
Subjt:  LVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCG

Query:  GNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG
         NYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG
Subjt:  GNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]1.6e-9974.27Show/hide
Query:  VWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWS
        VWL P IQGGPIIQQFG+RVIYD  SR DARLVDFMGRDGDWRW LVSLDLMDIWDR+QGVRPSPSVED WV V GSH+SFSI SA E IRPHS RVGWS
Subjt:  VWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWS

Query:  GLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG------------------
        GLLWGGGNIPKHSF  WLAI+DRLGTRDRLSRWD SIPLSC+LCGGNYESRDHLFF C FGWEIWSRILL MSSSHRI YWG                  
Subjt:  GLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG------------------

Query:  ---------------ERNLRLHGGAVWEPMVIFQLIRSCIK
                       ERN RLHGGA+ EPMV+FQLIRSCIK
Subjt:  ---------------ERNLRLHGGAVWEPMVIFQLIRSCIK

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]7.7e-11085.02Show/hide
Query:  VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGG
        VCLPFDEGGL IRDGSSWNIASTLKILWLLLVKSGSLWVAWVE+YILKGRSL EID GVGRSWCFR ILRK+DILKAHVKMEVGNG+K RVWL P IQGG
Subjt:  VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGG

Query:  PIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIP
        PIIQQFGERVIYDA SR DARL+DFMGRDGDWRW LV LDLMDIWDR+QGVRPSPSVED WV VPGSH+SFSI S  E IRPHSSRVGWSGLLWGGGNIP
Subjt:  PIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIP

Query:  KHSFYTWLAIKDRLGTRDRLSRWDSSI
        KHSF  WLAI+DRLGTR    R +  I
Subjt:  KHSFYTWLAIKDRLGTRDRLSRWDSSI

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932253.6e-9752.04Show/hide
Query:  RKRNLVTRCPSFKARPMLVPSV------------CLP---FDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWC
        R R+   R  SF  R  LV SV             LP    +EGGL IRDG++W  ASTLKILWL+L  SGSLWVAWVEAY+LKGRSL ++D  VGRSWC
Subjt:  RKRNLVTRCPSFKARPMLVPSV------------CLP---FDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWC

Query:  FRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRV
         RAILRK++ LK HV+M+VGNG +CRVWLDP +Q G I+++ GERV+YDA SRR+A L +F+G DG+W W                              
Subjt:  FRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRV

Query:  PGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSS
              FSI SA EAIRP   RV W GLLWGGGNIPKHSF  WLAIKDRLGTRDR  RWDSS+PLSCILC G  ESRDHLFF CPFG ++WSR+L  M+S
Subjt:  PGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSS

Query:  SHRIRYWG---------------------------------ERNLRLHGGAVWEPMVIFQLIRSCIK
        SHRI +WG                                 ERN RLHGG   +P+VIF LI + I+
Subjt:  SHRIRYWG---------------------------------ERNLRLHGGAVWEPMVIFQLIRSCIK

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein1.5e-10659.38Show/hide
Query:  IRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVI
        +RDG SWNI STLKILWLL   S SLWVAWVEAYILK +SL  +D GV RSWC RAILRKRD LK HV +EVG+G  CRVWLDP +QG PI++Q GERV+
Subjt:  IRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVI

Query:  YDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIK
        YDA SRR+ARL +F+G DG+W+W  VS++L+D+WDR+Q VRP  SV D WV VPG    FSI SA + IRP   RV W GLLWGGGN+PKHSF  WL IK
Subjt:  YDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIK

Query:  DRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------ERNLRL
        ++LGTRDRL RWDSS+P+S ILC G  ESRDHLFF CPFG ++WSR+L  M+SSHRIRYWG                                 E N RL
Subjt:  DRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------ERNLRL

Query:  HGGAVWEPMVIFQLIRSCIK
        HGG     ++IFQ I +CI+
Subjt:  HGGAVWEPMVIFQLIRSCIK

A0A5A7TZS0 Reverse transcriptase domain-containing protein3.4e-9554.68Show/hide
Query:  VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGG
        VCLPF+EGGL IRDG SWNIA+TLKI   LL   GSLWVAW+EAYILKG+SL ++D  VGRSWC RAILRKR+ +K HV                     
Subjt:  VCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGG

Query:  PIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIP
              GERV+YDA SRR+A+L DF+  +G+W W  VSL+L+D+W+R+Q V P  SV D WV VPG    FSI SA EAI P   RV W GLLWGGGNIP
Subjt:  PIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIP

Query:  KHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG----------------------------
        KHSF  WLAIKDRL TRDRL RWDSSIPLSCILC G  ESRDHLFF CPFG ++WSR+   M SSHRI +WG                            
Subjt:  KHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG----------------------------

Query:  -----ERNLRLHGGAVWEPMVIFQLIRSCIK
             ERN RLHGG   +P+++F LI + I+
Subjt:  -----ERNLRLHGGAVWEPMVIFQLIRSCIK

A0A5A7UP65 Reverse transcriptase2.1e-9755.21Show/hide
Query:  DEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQ
        +EGGL IRDG++W  ASTLKILWL+L  SGSLWVAWVEAY+LKGRSL ++D  VGRSWC RAILRK++ LK HV+M+VGNG +CRVWLDP +Q G I++Q
Subjt:  DEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQ

Query:  FGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFY
         GERV+YDA SRR+A L +F+G DG+W W                                    FSI SA EAIRP   RV W GLLWGGGNIPKHSF 
Subjt:  FGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFY

Query:  TWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------
         WLAIKDRLGTRDR  RWDSS+PLSCILC G  ESRDHLFF CPFG ++WSR+L  M+SSHRI +WG                                 
Subjt:  TWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------

Query:  ERNLRLHGGAVWEPMVIFQLIRSCIK
        ERN RLHGG   +P+VIF LI + I+
Subjt:  ERNLRLHGGAVWEPMVIFQLIRSCIK

A0A5D3D7P6 Reverse transcriptase6.2e-9754.91Show/hide
Query:  DEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQ
        +EGGL IRDG++W  ASTLKILWL+L  SGSLWVAWVEAY+LKGRSL ++D  VGRSWC RAILRK++ LK HV+M+VGNG +CRVWLDP +Q G I+++
Subjt:  DEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQ

Query:  FGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFY
         GERV+YDA SRR+A L +F+G DG+W W                                    FSI SA EAIRP   RV W GLLWGGGNIPKHSF 
Subjt:  FGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFY

Query:  TWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------
         WLAIKDRLGTRDR  RWDSS+PLSCILC G  ESRDHLFF CPFG ++WSR+L  M+SSHRI +WG                                 
Subjt:  TWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRIRYWG---------------------------------

Query:  ERNLRLHGGAVWEPMVIFQLIRSCIK
        ERN RLHGG   +P+VIF LI + I+
Subjt:  ERNLRLHGGAVWEPMVIFQLIRSCIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.3e-2130.41Show/hide
Query:  SWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMW
        SW +R + + R++ +  V  +VG+G   + W D     GP+I   G           DA  +     D  + W     DL            +PS     
Subjt:  SWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVEDMW

Query:  VRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIW
                 FS      A+ P +  V W   +W   ++PKH+F  W+   +RL TRDRL  W  SIP  C+LC  + ESR HLFF CPF   +W
Subjt:  VRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIW

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.0e-2731.39Show/hide
Query:  ILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRR---DARLVDFMGRDGDWRWSLV-SLDLMDIWDRIQGV-RPSP-SVEDMW
        +L  R + +  VK  +GNG+    W D     GP+I+  G+   Y + S R   +AR+V+ +G +G W+  L  S     I D I  +  PSP ++ED +
Subjt:  ILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRR---DARLVDFMGRDGDWRWSLV-SLDLMDIWDRIQGV-RPSP-SVEDMW

Query:  VRVPGS--HESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIW----
          V G    + FS     +AIRP +  + W+  +W  G +PKH+F  W++  DRL TR RL+ W       C LC    ESRDHL F C F  ++W    
Subjt:  VRVPGS--HESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIW----

Query:  SRI--------------------------LLFMSSSHRIRY--WGERNLRLHGGAVWEPMVIFQLIRSCIKVVL
        SR+                          LL   S+H I Y  W +RN  LH      P++IF+++   I+ ++
Subjt:  SRI--------------------------LLFMSSSHRIRY--WGERNLRLHGGAVWEPMVIFQLIRSCIKVVL

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-2428.82Show/hide
Query:  RLFLSPFHSFISFGMKIRK------RNLVTRCPSF---------KARPMLVPSVCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYIL
        +L  S  HS  +F M   +      + + + C SF         K   +    VC P DEGGL IR               L     GS W        +
Subjt:  RLFLSPFHSFISFGMKIRK------RNLVTRCPSF---------KARPMLVPSVCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYIL

Query:  KGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDR
         G + L        SW ++ IL+ R +    VK ++ NG     W D   + G +I   G R   D      A + + +      R    +  L+ I D 
Subjt:  KGRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDR

Query:  IQGVRPS--PSVEDMWVRVPGSHE----SFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESR
        I  VR     S ED  VR  G+ +     F+      A R    +V W   +W     PK+S   W+AIK+RL T DR+  W++    SC+LC    E+R
Subjt:  IQGVRPS--PSVEDMWVRVPGSHE----SFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESR

Query:  DHLFFPCPFGWEI-WSRILLFMSSSHRIRYWGERNLRLHG
        DHLFF CP+  E+ +     F  + H +  W ERN R HG
Subjt:  DHLFFPCPFGWEI-WSRILLFMSSSHRIRYWGERNLRLHG

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.1e-2129.84Show/hide
Query:  RDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSL-----VSLDLMDIWDRIQGVRPSPSVED-MW-VRV
        R + +  +  EVG+G   + W D  I  GP+I+  G           DA + D +     W  S      + + L ++    QG+      +  +W   +
Subjt:  RDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSL-----VSLDLMDIWDRIQGVRPSPSVED-MW-VRV

Query:  PGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIW
              FS      A+ P S  V W   +W   ++PKH+F  W+   +RL TRDRL  W  SIP  C+LC  + +SR HLFF C F   +W
Subjt:  PGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIW

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.8e-2534.63Show/hide
Query:  SWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSV----
        SW +++I + R + +  V  +VG+G  C  W +     GP+I   G+     +   R+A + D + RDG W W   S     I   ++   P  SV    
Subjt:  SWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSV----

Query:  ---ED---MWVRVPGSHESFSIVSACEAI--RPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCP
           ED   MW +V GS  S    SA   I   P   +V W   +W  G IPKH+F +W+ I+ RL TRD+L  W   +P  C+LC    E+R HLFF C 
Subjt:  ---ED---MWVRVPGSHESFSIVSACEAI--RPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCP

Query:  FGWEI
        F  EI
Subjt:  FGWEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCATTCTTTCATCTCTTT
CGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTA
TTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTGGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAA
GGGAGATCGCTCTTGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAA
TGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGC
TTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAG
GATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGG
TGGGGGAAATATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTA
TTCTTTGTGGAGGGAACTATGAGTCTCGTGACCATTTGTTTTTTCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATA
CGGTATTGGGGGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCC
AATTGAGTTCATGATGTGGGGTTGTTTTGGGTACTTATGGGTTGTTTTGTCTAGTTACTTGTTCTATGAGTGTTGTTCGCTCTTGTGCCTTGACCTCAGGCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCATTCTTTCATCTCTTT
CGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTTTGTCTTCCTTTTGATGAAGGAGGTCTTGCTA
TTCGCGATGGATCTTCTTGGAATATAGCAAGCACGTTAAAGATCTTATGGTTGCTTCTAGTTAAATCTGGTAGTTTGTGGGTTGCTTGGGTGGAAGCTTATATCCTTAAA
GGGAGATCGCTCTTGGAGATCGATGTTGGGGTGGGTCGATCTTGGTGTTTTAGGGCAATCTTGCGTAAGCGGGATATCCTTAAAGCTCATGTTAAGATGGAGGTGGGCAA
TGGTAAGAAGTGTAGAGTGTGGTTGGATCCAAGGATTCAGGGTGGACCGATTATCCAGCAGTTTGGGGAGAGGGTGATTTATGATGCAGATAGTCGGCGGGATGCGAGGC
TTGTGGATTTCATGGGTCGGGATGGAGATTGGAGGTGGTCGCTTGTTTCTTTGGATTTGATGGACATTTGGGATAGAATTCAGGGAGTGAGGCCGAGTCCGAGTGTTGAG
GATATGTGGGTCCGGGTGCCAGGTAGTCATGAGAGTTTTTCGATCGTCAGTGCGTGCGAGGCTATTCGTCCTCATAGTAGTAGGGTTGGCTGGTCGGGTTTACTGTGGGG
TGGGGGAAATATTCCTAAGCACTCCTTCTATACTTGGTTGGCCATCAAGGATAGGTTGGGTACTAGAGATAGATTAAGTCGGTGGGATAGTTCGATTCCTTTATCGTGTA
TTCTTTGTGGAGGGAACTATGAGTCTCGTGACCATTTGTTTTTTCCTTGTCCTTTTGGGTGGGAGATTTGGTCTAGAATCCTTTTGTTTATGTCATCTTCTCACAGGATA
CGGTATTGGGGGGAGCGAAATCTTCGTCTTCATGGAGGTGCTGTTTGGGAGCCTATGGTTATTTTCCAGCTCATTCGGTCGTGTATTAAAGTCGTGCTGCTTCTTGGTCC
AATTGAGTTCATGATGTGGGGTTGTTTTGGGTACTTATGGGTTGTTTTGTCTAGTTACTTGTTCTATGAGTGTTGTTCGCTCTTGTGCCTTGACCTCAGGCTGTGA
Protein sequenceShow/hide protein sequence
MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLVPSVCLPFDEGGLAIRDGSSWNIASTLKILWLLLVKSGSLWVAWVEAYILK
GRSLLEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQGVRPSPSVE
DMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGGNYESRDHLFFPCPFGWEIWSRILLFMSSSHRI
RYWGERNLRLHGGAVWEPMVIFQLIRSCIKVVLLLGPIEFMMWGCFGYLWVVLSSYLFYECCSLLCLDLRL