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CSPI03G24800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G24800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr3:21918518..21920032
RNA-Seq ExpressionCSPI03G24800
SyntenyCSPI03G24800
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039608.1 reverse transcriptase [Cucumis melo var. makuwa]5.7e-1235.81Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N HPI +E++K +A +  YTV E+E LA+ H LR  RQ     +FV + +N   CHF T P LTS QAR +  + + DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA
                   + A  Q  +  G  RD  +E ++++ VA + M+L KA
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA

KAA0046544.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-1235.14Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N HPI +E+QK +A +  YTV E+E LA+ H LR  RQ     +FV + +N   CHF T P LTS QAR +  + + DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA
                   + A  Q  +  G  RD  ++ ++++  A + M+L KA
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA

KAA0060483.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-1335.33Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N H I +E++K +A +  YTVFE+E LA+ H LR  RQ     +FV +M+N   CHF T P LTS QAR +  +++ DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ
                   + A  +  +  G  RD S+E ++++  A + M+L KA +
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ

TYK18568.1 reverse transcriptase [Cucumis melo var. makuwa]8.9e-1335.33Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N H I +E++K +A +  YTVFE+E LA+ H LR  RQ     +FV +M+N   CHF T P LTS QAR +  +++ DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ
                   + A  +  +  G  RD S+E ++++  A + M+L KA +
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ

XP_031736960.1 uncharacterized protein LOC116402112 [Cucumis sativus]2.3e-13371.5Show/hide
Query:  MQLREDRVREDTRCVVERYGDGKRESLCMPGSPTENNHRMAHSESPGLWRQSKRLSSAGFSRPAGAPYKAQGFLREEEKGRFSVDSRVLKQAPRRGPILG
        MQLRE+ VREDTRCVVE+YGDGKRESL MPGSPTENNHRMA SESP LWRQSKRLSSAGF+RPAGAPYKAQGFLREEE  R  V++RVLKQAP RGPILG
Subjt:  MQLREDRVREDTRCVVERYGDGKRESLCMPGSPTENNHRMAHSESPGLWRQSKRLSSAGFSRPAGAPYKAQGFLREEEKGRFSVDSRVLKQAPRRGPILG

Query:  S------------------------NRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVL
        S                        NRHPI FE+QKKSAT+GNYT+FEEETLAIAH+LRDGR+GSH LTFVKEMNNDVACHFGT PNL+SNQARRRRV+ 
Subjt:  S------------------------NRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVL

Query:  KLDFESERRKSSPGVPQVSARTQACQADGPKRDASKESMKENSVAHDGMSLTK--------------ATQPGVTAMKKSSTDGSSTMSVGDRQYVLSRPV
        K DFESER+KS+ GVP VSARTQACQAD P RDAS ES KENSVAHDG S TK              ATQPGVTAMKKSST+GS TMSVGD QYVLSRPV
Subjt:  KLDFESERRKSSPGVPQVSARTQACQADGPKRDASKESMKENSVAHDGMSLTK--------------ATQPGVTAMKKSSTDGSSTMSVGDRQYVLSRPV

Query:  DRSCMKKEPQTCNLAKKWKRRSDT--ANLEKVSKQLKRWADGKHRPLDLHVEDTKIFTSWEHTRNKQKLKEKTHGEDTQ
        D SCM KEPQT NLAKKWKRR DT  ANLE VSK+L+RWADGKHRPLDLHVE   I T         K++  +  E T+
Subjt:  DRSCMKKEPQTCNLAKKWKRRSDT--ANLEKVSKQLKRWADGKHRPLDLHVEDTKIFTSWEHTRNKQKLKEKTHGEDTQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9P9 Reverse transcriptase2.8e-1235.81Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N HPI +E++K +A +  YTV E+E LA+ H LR  RQ     +FV + +N   CHF T P LTS QAR +  + + DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA
                   + A  Q  +  G  RD  +E ++++ VA + M+L KA
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA

A0A5A7TU11 Reverse transcriptase4.7e-1235.14Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N HPI +E+QK +A +  YTV E+E LA+ H LR  RQ     +FV + +N   CHF T P LTS QAR +  + + DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA
                   + A  Q  +  G  RD  ++ ++++  A + M+L KA
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA

A0A5A7UWX1 Reverse transcriptase3.3e-1335.33Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N H I +E++K +A +  YTVFE+E LA+ H LR  RQ     +FV +M+N   CHF T P LTS QAR +  +++ DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ
                   + A  +  +  G  RD S+E ++++  A + M+L KA +
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ

A0A5D3C4R1 Reverse transcriptase6.2e-1235.14Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N HPI +E++K +A +  YTV E+E LA+ H LR  RQ     +FV + +N   CHF T P LTS QAR +  + + DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA
                   + A  Q  +  G  RD  +E ++++  A + M+L KA
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKA

A0A5D3D4V2 Reverse transcriptase4.3e-1335.33Show/hide
Query:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--
        G +L  N H I +E++K +A +  YTVFE+E LA+ H LR  RQ     +FV +M+N   CHF T P LTS QAR +  +++ DFE E +K S       
Subjt:  GPILGSNRHPIEFENQKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQ--

Query:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ
                   + A  +  +  G  RD S+E ++++  A + M+L KA +
Subjt:  -----------VSARTQACQADGPKRDASKESMKENSVAHDGMSLTKATQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTGAGAGAGGACCGTGTTCGAGAAGACACAAGGTGTGTCGTAGAGAGATATGGAGATGGGAAACGTGAGAGTTTGTGCATGCCAGGATCGCCTACGGAGAATAA
TCATCGTATGGCACACTCAGAGTCACCTGGACTCTGGAGACAATCAAAGAGATTGTCGAGTGCAGGGTTCTCTAGACCTGCAGGAGCTCCGTATAAAGCACAAGGCTTTT
TACGTGAAGAAGAGAAAGGACGGTTTAGTGTCGACAGCCGTGTCCTGAAGCAAGCCCCGAGGAGAGGGCCAATTCTTGGGTCTAATAGACACCCTATCGAATTTGAGAAT
CAGAAGAAGAGTGCCACTAAGGGCAATTATACAGTGTTTGAAGAAGAAACGTTGGCCATAGCACACAATCTGAGGGATGGGAGACAGGGTTCCCATATATTAACGTTTGT
CAAAGAGATGAACAACGACGTTGCCTGCCATTTCGGTACTTGGCCGAATCTAACTTCAAATCAAGCAAGGAGACGAAGAGTCGTGCTCAAACTTGATTTTGAGTCAGAAC
GTAGGAAGAGCAGTCCTGGGGTTCCACAGGTGTCGGCTCGTACACAGGCCTGTCAAGCTGATGGCCCAAAACGAGATGCGTCCAAGGAATCCATGAAGGAAAACTCTGTC
GCTCATGATGGCATGAGTTTGACGAAGGCAACACAACCGGGTGTTACGGCTATGAAGAAATCATCAACTGACGGAAGCTCAACAATGAGTGTTGGCGACAGACAATATGT
ATTGTCGCGTCCTGTTGATCGTTCTTGTATGAAGAAGGAGCCTCAGACTTGTAACCTTGCCAAGAAGTGGAAGCGTAGATCAGACACAGCCAATTTGGAGAAAGTCTCGA
AGCAGCTGAAAAGATGGGCAGATGGGAAGCATCGCCCCCTGGACCTTCATGTGGAAGATACGAAGATCTTCACCTCGTGGGAGCACACGAGGAATAAACAGAAGTTGAAG
GAGAAGACCCATGGGGAGGATACACAAGTTCGTGACGAAGCAGAAGAGCCTCCTCATGGAAGAAACCTGTGGAAGACGTACCAAGAGCGTGAAGCGTGGAGGCAGAAAAT
CGAAGGATTCCAGCTTTGCCAGTCGACGGGGACGTCAACTGTCATAAAGCTTGGGTGTGACGTTTCGGCATTTTCCATATGCAAGCCTGCCAGAGAAGAAAATGTTCAAA
ATGTACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACTGAGAGAGGACCGTGTTCGAGAAGACACAAGGTGTGTCGTAGAGAGATATGGAGATGGGAAACGTGAGAGTTTGTGCATGCCAGGATCGCCTACGGAGAATAA
TCATCGTATGGCACACTCAGAGTCACCTGGACTCTGGAGACAATCAAAGAGATTGTCGAGTGCAGGGTTCTCTAGACCTGCAGGAGCTCCGTATAAAGCACAAGGCTTTT
TACGTGAAGAAGAGAAAGGACGGTTTAGTGTCGACAGCCGTGTCCTGAAGCAAGCCCCGAGGAGAGGGCCAATTCTTGGGTCTAATAGACACCCTATCGAATTTGAGAAT
CAGAAGAAGAGTGCCACTAAGGGCAATTATACAGTGTTTGAAGAAGAAACGTTGGCCATAGCACACAATCTGAGGGATGGGAGACAGGGTTCCCATATATTAACGTTTGT
CAAAGAGATGAACAACGACGTTGCCTGCCATTTCGGTACTTGGCCGAATCTAACTTCAAATCAAGCAAGGAGACGAAGAGTCGTGCTCAAACTTGATTTTGAGTCAGAAC
GTAGGAAGAGCAGTCCTGGGGTTCCACAGGTGTCGGCTCGTACACAGGCCTGTCAAGCTGATGGCCCAAAACGAGATGCGTCCAAGGAATCCATGAAGGAAAACTCTGTC
GCTCATGATGGCATGAGTTTGACGAAGGCAACACAACCGGGTGTTACGGCTATGAAGAAATCATCAACTGACGGAAGCTCAACAATGAGTGTTGGCGACAGACAATATGT
ATTGTCGCGTCCTGTTGATCGTTCTTGTATGAAGAAGGAGCCTCAGACTTGTAACCTTGCCAAGAAGTGGAAGCGTAGATCAGACACAGCCAATTTGGAGAAAGTCTCGA
AGCAGCTGAAAAGATGGGCAGATGGGAAGCATCGCCCCCTGGACCTTCATGTGGAAGATACGAAGATCTTCACCTCGTGGGAGCACACGAGGAATAAACAGAAGTTGAAG
GAGAAGACCCATGGGGAGGATACACAAGTTCGTGACGAAGCAGAAGAGCCTCCTCATGGAAGAAACCTGTGGAAGACGTACCAAGAGCGTGAAGCGTGGAGGCAGAAAAT
CGAAGGATTCCAGCTTTGCCAGTCGACGGGGACGTCAACTGTCATAAAGCTTGGGTGTGACGTTTCGGCATTTTCCATATGCAAGCCTGCCAGAGAAGAAAATGTTCAAA
ATGTACTATAG
Protein sequenceShow/hide protein sequence
MQLREDRVREDTRCVVERYGDGKRESLCMPGSPTENNHRMAHSESPGLWRQSKRLSSAGFSRPAGAPYKAQGFLREEEKGRFSVDSRVLKQAPRRGPILGSNRHPIEFEN
QKKSATKGNYTVFEEETLAIAHNLRDGRQGSHILTFVKEMNNDVACHFGTWPNLTSNQARRRRVVLKLDFESERRKSSPGVPQVSARTQACQADGPKRDASKESMKENSV
AHDGMSLTKATQPGVTAMKKSSTDGSSTMSVGDRQYVLSRPVDRSCMKKEPQTCNLAKKWKRRSDTANLEKVSKQLKRWADGKHRPLDLHVEDTKIFTSWEHTRNKQKLK
EKTHGEDTQVRDEAEEPPHGRNLWKTYQEREAWRQKIEGFQLCQSTGTSTVIKLGCDVSAFSICKPAREENVQNVL