CuGenDBv2

Gene ID	CSPI03G24910
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA topoisomerase 2-binding protein 1
Genome location	Chr3:22107862..22108581
RNA-Seq Expression	CSPI03G24910
Synteny	CSPI03G24910
Gene Ontology terms	GO:0016853 - isomerase activity (molecular function)
InterPro domains	IPR001357 - BRCT domain IPR036420 - BRCT domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8637332.1 hypothetical protein CSA_000003 [Cucumis sativus]

6.0e-17

92.73

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEKVEIGKLVSAMGGVLHTKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

KAE8648321.1 hypothetical protein Csa_004667 [Cucumis sativus]

3.4e-20

92.06

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVLLELSIFLT
        MDGVKILAS FQEDEKVEIGKLVSAMG VLHTKA LDVSF+IAKNALAAKYKV+LLELSIFLT
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVLLELSIFLT

KAE8650753.1 hypothetical protein Csa_017509 [Cucumis sativus]

2.7e-17

92.73

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSF+IAKN LAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

XP_031740436.1 LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1 [Cucumis sativus]

6.0e-17

92.73

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEKVEIGKLVSAMGGVLHTKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

XP_031745330.1 LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus]

6.0e-17

92.73

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEKVEIGKLVSAMGGVLHTKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KY49 BRCT domain-containing protein

2.9e-17

92.73

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEKVEIGKLVSAMGGVLHTKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X1

4.2e-16

89.09

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEK EIGKLVSAMGGVL+TKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X2

4.2e-16

89.09

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEK EIGKLVSAMGGVL+TKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X2

4.2e-16

89.09

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEK EIGKLVSAMGGVL+TKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X2

4.2e-16

89.09

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDGVKILAS FQEDEK EIGKLVSAMGGVL+TKASLDVSF+IAKNALAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G77320.1 transcription coactivators

2.8e-12

63.64

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDG+K+LAS F  DEKV+I +LV++MGGVL ++AS DV+F+I KN LAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

AT1G77320.2 transcription coactivators

2.8e-12

63.64

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Query:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL
        MDG+K+LAS F  DEKV+I +LV++MGGVL ++AS DV+F+I KN LAAKYK  L
Subjt:  MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVL

Sequences

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CDS sequence

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ATGGATGGTGTGAAAATCTTGGCATCCGATTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGA
TGTCAGTTTTATTATCGCGAAGAATGCTTTGGCTGCGAAATACAAGGTCGTGTTGCTTGAACTTTCGATTTTCTTGACGTGA

mRNA sequence

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CTGCTTTCAGGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTCCTCAGTGCGTGATGTCATGTGCAAAAAGAGCACATACCTCTTCCTCAACAGGGT
TATACTTGCTGCCTTGCCATGGATGGTGTGAAAATCTTGGCATCCGATTTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCA
TACGAAAGCATCACTAGATGTCAGTTTTATTATCGCGAAGAATGCTTTGGCTGCGAAATACAAGGTCGTGTTGCTTGAACTTTCGATTTTCTTGACGTGA

Protein sequence

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MDGVKILASDFQEDEKVEIGKLVSAMGGVLHTKASLDVSFIIAKNALAAKYKVVLLELSIFLT

CSPI03G24910 (gene) of Cucumber (PI 183967) v1 genome