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CSPI03G25030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G25030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription factor UPBEAT1
Genome locationChr3:22250661..22250930
RNA-Seq ExpressionCSPI03G25030
SyntenyCSPI03G25030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]9.7e-3795.56Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KAE9618351.1 putative myc-type, basic helix-loop-helix (bHLH) domain-containing protein [Lupinus albus]9.1e-1152.81Show/hide
Query:  EILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        ++LAK +V  +R  K V+KK+V      SR   K I  +R+R LK++VP SES+EL+GLF ETADYI+ LQ +VR+MQ +V+VL GSDE
Subjt:  EILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KAG6787023.1 hypothetical protein POTOM_008650 [Populus tomentosa]3.8e-0966.67Show/hide
Query:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R LKK++P SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]3.0e-38100Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

XP_034911859.1 transcription factor UPBEAT1-like [Populus alba]3.8e-0966.67Show/hide
Query:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R LKK++P SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein1.5e-38100Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A4V5ZXB7 Uncharacterized protein1.9e-0966.67Show/hide
Query:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R LKK++P SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A5A7T9M0 Basic helix-loop-helix protein4.7e-3795.56Show/hide
Query:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A6A4QW51 Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein4.4e-1152.81Show/hide
Query:  EILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        ++LAK +V  +R  K V+KK+V      SR   K I  +R+R LK++VP SES+EL+GLF ETADYI+ LQ +VR+MQ +V+VL GSDE
Subjt:  EILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

B9GSV5 Uncharacterized protein3.2e-0964.71Show/hide
Query:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Subjt:  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT12.8e-0742.31Show/hide
Query:  RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL
        R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADYI+ L+MKV++MQ +V VL
Subjt:  RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators2.0e-0842.31Show/hide
Query:  RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL
        R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADYI+ L+MKV++MQ +V VL
Subjt:  RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADYIVWLQMKVRMMQALVHVL

AT4G30410.1 sequence-specific DNA binding transcription factors3.0e-0434.94Show/hide
Query:  LAKDTVSDRRI---AKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNG-LFRETADYIVWLQMKVRMMQALV
        L K TV  R+I   +K+++++K +  S  + +  KR+  +R + L+ +VP  E M  +  L +ET DYIV LQ +V +M+++V
Subjt:  LAKDTVSDRRI---AKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNG-LFRETADYIVWLQMKVRMMQALV

AT4G30410.2 sequence-specific DNA binding transcription factors3.0e-0434.94Show/hide
Query:  LAKDTVSDRRI---AKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNG-LFRETADYIVWLQMKVRMMQALV
        L K TV  R+I   +K+++++K +  S  + +  KR+  +R + L+ +VP  E M  +  L +ET DYIV LQ +V +M+++V
Subjt:  LAKDTVSDRRI---AKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNG-LFRETADYIVWLQMKVRMMQALV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGAT
TTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGA
AGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGAT
TTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATTGTGTGGTTGCAAATGA
AGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAG
Protein sequenceShow/hide protein sequence
MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE