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CSPI03G25430 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G25430
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr3:22774469..22775631
RNA-Seq ExpressionCSPI03G25430
SyntenyCSPI03G25430
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044249 - cellular biosynthetic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:1901576 - organic substance biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.9e-2650Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M   + EIEKFDG GDF LW  +I  +LG QK+ KAL DP ELP TLT +++E ++ +AY TLI+N++DN++RQV+EE TA+  W KL+SLY  KDLPNK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK
        +            F F  N N+ L E LD+ K
Subjt:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK

KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]2.8e-2347.73Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M   + EIEKFDG GDF L   +I  +LG QK+ KAL DP EL  TLT +++E ++ +AYGTLI+N+++N++RQ++EE TA+  W KL+SLY  KDLPNK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK
        +   +        F F  N N+ L E LD+ K
Subjt:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK

PON96088.1 hypothetical protein TorRG33x02_080180, partial [Trema orientale]1.6e-2358.42Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M  +++EIEKFDGKGDF +WK K+K +L QQK  KAL D S LP T+  ++KEE+   AY  LILNL+DN++RQV E++TA KVW KL+SLY +K L NK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  I
        I
Subjt:  I

XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]4.2e-2454.95Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        MA  R EIEKFDGK DF L KAKIK +LGQQK+  A+ DP++ P TL+ A KE ++L AYGT+ILN++D+I+RQ++++ TAY +W KL  +Y +KDLPNK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  IAW---FNTYR
          +   F TY+
Subjt:  IAW---FNTYR

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]5.5e-2442.76Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        MA  R EIEKFD K DF LWK KIKV+LGQQK+  A+ DP++ P TLT A+KE +++ A GT++LN++DN++RQV+ + TAY +W KL  +Y +KDL NK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  IAW------------------FNTYREISGEFVFMGNN----NETLLELDQM
                              N ++ +S EF  +G N    NE  + L+ +
Subjt:  IAW------------------FNTYREISGEFVFMGNN----NETLLELDQM

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein1.7e-2357.43Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M  +++EIEKFDGKGDF +WK K+K +L QQK  K L D S LP T+  ++KEE+   AY  LILNL+DN++RQV E++TA KVW KL+SLY +K L NK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  I
        I
Subjt:  I

A0A2P5FE65 Uncharacterized protein (Fragment)7.8e-2458.42Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M  +++EIEKFDGKGDF +WK K+K +L QQK  KAL D S LP T+  ++KEE+   AY  LILNL+DN++RQV E++TA KVW KL+SLY +K L NK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  I
        I
Subjt:  I

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-2650Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M   + EIEKFDG GDF LW  +I  +LG QK+ KAL DP ELP TLT +++E ++ +AY TLI+N++DN++RQV+EE TA+  W KL+SLY  KDLPNK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK
        +            F F  N N+ L E LD+ K
Subjt:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass1.3e-2347.73Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M   + EIEKFDG GDF L   +I  +LG QK+ KAL DP EL  TLT +++E ++ +AYGTLI+N+++N++RQ++EE TA+  W KL+SLY  KDLPNK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK
        +   +        F F  N N+ L E LD+ K
Subjt:  IAWFNTYREISGEFVFMGNNNETLLE-LDQMK

A0A5D3BQH4 Transcription initiation factor TFIID subunit 2-like6.6e-2356.52Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLY
        MA+ R +IEKFDGKG F LWKAK+K ++GQ+K  KA+ DP +LP  +T  +KE M+  AYG ++LNLSDN++R+V+ +ETAY +W KLE LY
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-1336.63Show/hide
Query:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK
        M+  + E+ KF+G   F+ W+ +++ LL QQ  HK L   S+ P T+ A    ++   A   + L+LSD+++  +++E+TA  +W +LESLY SK L NK
Subjt:  MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNK

Query:  I
        +
Subjt:  I

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATAGCAAGAGTAGAAATTGAGAAGTTTGATGGAAAGGGAGACTTTGCATTATGGAAAGCAAAGATCAAAGTCTTGCTTGGACAGCAAAAGTCTCATAAAGCCCT
TTTTGATCCTTCAGAACTTCCAACAACCCTCACAGCAGCACAAAAAGAAGAAATGAAATTAATTGCCTATGGAACACTAATACTAAACCTTAGTGACAACATAATTAGGC
AAGTTCTAGAAGAAGAAACAGCATATAAAGTTTGGATGAAACTAGAAAGCCTATATGCCTCTAAAGATCTCCCAAACAAAATAGCATGGTTCAATACCTATAGAGAGATC
AGTGGAGAATTTGTGTTCATGGGGAATAATAATGAAACATTGCTGGAATTGGATCAGATGAAACTAAAAGATGGGACTGGTGTGAATACAAAGGGAAATGTGGAGTTTTC
GAAGTCTTTATGGGATCTAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATAGCAAGAGTAGAAATTGAGAAGTTTGATGGAAAGGGAGACTTTGCATTATGGAAAGCAAAGATCAAAGTCTTGCTTGGACAGCAAAAGTCTCATAAAGCCCT
TTTTGATCCTTCAGAACTTCCAACAACCCTCACAGCAGCACAAAAAGAAGAAATGAAATTAATTGCCTATGGAACACTAATACTAAACCTTAGTGACAACATAATTAGGC
AAGTTCTAGAAGAAGAAACAGCATATAAAGTTTGGATGAAACTAGAAAGCCTATATGCCTCTAAAGATCTCCCAAACAAAATAGCATGGTTCAATACCTATAGAGAGATC
AGTGGAGAATTTGTGTTCATGGGGAATAATAATGAAACATTGCTGGAATTGGATCAGATGAAACTAAAAGATGGGACTGGTGTGAATACAAAGGGAAATGTGGAGTTTTC
GAAGTCTTTATGGGATCTAAGTTAG
Protein sequenceShow/hide protein sequence
MAIARVEIEKFDGKGDFALWKAKIKVLLGQQKSHKALFDPSELPTTLTAAQKEEMKLIAYGTLILNLSDNIIRQVLEEETAYKVWMKLESLYASKDLPNKIAWFNTYREI
SGEFVFMGNNNETLLELDQMKLKDGTGVNTKGNVEFSKSLWDLS