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CSPI03G26230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G26230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionlight-regulated protein-like
Genome locationChr3:23559659..23561675
RNA-Seq ExpressionCSPI03G26230
SyntenyCSPI03G26230
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACV88397.1 GA-like protein, partial [Cucumis sativus]4.4e-69100Show/hide
Query:  VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEE
        VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEE
Subjt:  VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEE

Query:  IDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        IDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  IDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

KAA0066931.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa]8.1e-5585.71Show/hide
Query:  AVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASS
        AVLSIAVPSLLPSSTLS++  SHFP ITF S+SSRRS+IKATASVVYDTSVVDYSSAISVFPAEACETIGGEAC W NMFPEVRLQ +  NNQNP VA+ 
Subjt:  AVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASS

Query:  EEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  EEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

KAE8650797.1 hypothetical protein Csa_017474 [Cucumis sativus]3.1e-70100Show/hide
Query:  QAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASS
        QAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASS
Subjt:  QAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASS

Query:  EEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  EEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

XP_004145699.2 light-regulated protein, chloroplastic [Cucumis sativus]9.5e-80100Show/hide
Query:  MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFP
        MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFP
Subjt:  MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFP

Query:  EVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  EVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]3.6e-5584.29Show/hide
Query:  MQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVAS
        MQAVLSIAVP LLP STLS+N PS FPLI+FSSH SRRS+IKATASVVYD S+VDYSSAISVFPAEACETIGGEAC W NMFPEVR+ Q SLNNQ P  +
Subjt:  MQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVAS

Query:  SEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
         EEIDREYLDYADS+TVFPGEACDDLGGEFCEPEFLN VF
Subjt:  SEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein4.6e-80100Show/hide
Query:  MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFP
        MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFP
Subjt:  MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFP

Query:  EVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  EVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

A0A1S3BND3 light-regulated protein isoform X23.3e-5478.57Show/hide
Query:  SKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQ
        + P L    +    AVLSIAVPSLLPSSTLS++  SHFP ITF S+SSR S+IKATASVVYDTSVVDYSSAISVFPAEACETIGGEAC W NMFPEVRLQ
Subjt:  SKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQ

Query:  QASLNNQNP-VASSEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
         +  NNQNP VA+ EEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  QASLNNQNP-VASSEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

A0A1S4DXW1 light-regulated protein isoform X32.5e-5482.64Show/hide
Query:  ITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-
        ++  AVLSIAVPSLLPSSTLS++  SHFP ITF S+SSR S+IKATASVVYDTSVVDYSSAISVFPAEACETIGGEAC W NMFPEVRLQ +  NNQNP 
Subjt:  ITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-

Query:  VASSEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        VA+ EEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  VASSEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

A0A5A7VMP8 Light-regulated protein isoform X23.9e-5585.71Show/hide
Query:  AVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASS
        AVLSIAVPSLLPSSTLS++  SHFP ITF S+SSRRS+IKATASVVYDTSVVDYSSAISVFPAEACETIGGEAC W NMFPEVRLQ +  NNQNP VA+ 
Subjt:  AVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNP-VASS

Query:  EEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  EEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

C9E9F1 GA-like protein (Fragment)2.1e-69100Show/hide
Query:  VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEE
        VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEE
Subjt:  VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEE

Query:  IDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        IDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  IDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic3.3e-1954.44Show/hide
Query:  ATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCE
        A A+V  + + VDYSS ISVFP EAC+ IGGEAC  + M+PE +L  ++    +  A++EE+DR+YL Y +  TVFP EACDDLGGEFC+
Subjt:  ATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCE

Q96500 Light-regulated protein 1, chloroplastic6.7e-2047.89Show/hide
Query:  MQAVLSIAVPSLLP-SSTLSSNKPSHFPLITFSSHSSRRSSIK-----ATASVVYDTSVVDYSSAI-SVFPAEACETIGGEACGWENMFPEVRLQQASLN
        MQ  L I    LLP  S++SS K +   L+  ++ +SR SS++     +++S+  D + VDY+S+I SVFPAEACE I G AC   +++PEV+L    ++
Subjt:  MQAVLSIAVPSLLP-SSTLSSNKPSHFPLITFSSHSSRRSSIK-----ATASVVYDTSVVDYSSAI-SVFPAEACETIGGEACGWENMFPEVRLQQASLN

Query:  NQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF
           PVA SE +DREY +Y   KTVF  EACDDLGGEFCEP+F
Subjt:  NQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like4.8e-2147.89Show/hide
Query:  MQAVLSIAVPSLLP-SSTLSSNKPSHFPLITFSSHSSRRSSIK-----ATASVVYDTSVVDYSSAI-SVFPAEACETIGGEACGWENMFPEVRLQQASLN
        MQ  L I    LLP  S++SS K +   L+  ++ +SR SS++     +++S+  D + VDY+S+I SVFPAEACE I G AC   +++PEV+L    ++
Subjt:  MQAVLSIAVPSLLP-SSTLSSNKPSHFPLITFSSHSSRRSSIK-----ATASVVYDTSVVDYSSAI-SVFPAEACETIGGEACGWENMFPEVRLQQASLN

Query:  NQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF
           PVA SE +DREY +Y   KTVF  EACDDLGGEFCEP+F
Subjt:  NQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCATCCAAATCTCAAAACCTTATTTACAACATATCATCAAAATCACAATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCCCAGCTCAACACTTTCCAG
TAATAAACCTTCTCACTTCCCTTTGATCACATTTTCTTCTCACTCATCCCGTCGCTCGTCCATCAAAGCAACGGCCTCGGTCGTCTACGACACATCTGTGGTTGATTATA
GTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTGGTTGGGAAAATATGTTTCCAGAAGTAAGGCTTCAGCAGGCTTCACTTAAC
AATCAAAACCCCGTCGCTTCTTCAGAGGAGATTGATAGAGAATATCTTGATTATGCCGATTCAAAGACTGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAGTT
CTGTGAACCTGAGTTCCTAAATGGCGTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
GGGAAGAAGAAGCAAAGCAATCTTATCCAGAGAGACACCCTCCAATGTATTCTATATAAAGAGTTAATAGGAACTTACTTATGCTCATCCAAATCTCAAAACCTTATTTA
CAACATATCATCAAAATCACAATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCCCAGCTCAACACTTTCCAGTAATAAACCTTCTCACTTCCCTTTGATCAC
ATTTTCTTCTCACTCATCCCGTCGCTCGTCCATCAAAGCAACGGCCTCGGTCGTCTACGACACATCTGTGGTTGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAG
CATGTGAGACAATAGGTGGAGAGGCATGTGGTTGGGAAAATATGTTTCCAGAAGTAAGGCTTCAGCAGGCTTCACTTAACAATCAAAACCCCGTCGCTTCTTCAGAGGAG
ATTGATAGAGAATATCTTGATTATGCCGATTCAAAGACTGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAGTTCTGTGAACCTGAGTTCCTAAATGGCGTTTT
CTAGTCTTTTTATTTTATATTACAACAACAGAAAAATGGCTTCTTAGTTCTTAGTTTAATCAGTCCCCATATCATAGCTTCTGTAACTGTGACACCCTTTTCACCATTCT
CAATAAATAATAATCCTTAAATATTTTAGCC
Protein sequenceShow/hide protein sequence
MLIQISKPYLQHIIKITMQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVFPAEACETIGGEACGWENMFPEVRLQQASLN
NQNPVASSEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF