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CSPI03G26540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G26540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptioncyclic nucleotide-gated ion channel 1-like isoform X3
Genome locationChr3:23983328..23983702
RNA-Seq ExpressionCSPI03G26540
SyntenyCSPI03G26540
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005216 - ion channel activity (molecular function)
InterPro domainsIPR000595 - Cyclic nucleotide-binding domain
IPR014710 - RmlC-like jelly roll fold
IPR018490 - Cyclic nucleotide-binding-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650811.1 hypothetical protein Csa_017590, partial [Cucumis sativus]1.3e-60100Show/hide
Query:  MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLK
        MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLK
Subjt:  MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLK

Query:  TQTQMEAFTLKAIDPQYHIIP
        TQTQMEAFTLKAIDPQYHIIP
Subjt:  TQTQMEAFTLKAIDPQYHIIP

TYK31713.1 cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa]6.6e-4482.46Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +VPMLKEFEEEKL ++MKDMKPMVF E SYIIREGE +EQMLLFTKGMGL FSKSTG RTTI+TFGKGDLFGEQLL WA  NL   EIPL +CTLKTQTQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

XP_008449547.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]8.7e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

XP_016900693.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]8.7e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

XP_016900694.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo]8.7e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

TrEMBL top hitse value%identityAlignment
A0A1S3BLM4 cyclic nucleotide-gated ion channel 1-like isoform X14.2e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

A0A1S4DYA3 cyclic nucleotide-gated ion channel 1-like isoform X34.2e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

A0A5A7V0L3 Cyclic nucleotide-gated ion channel 1-like isoform X14.2e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

A0A5D3DCD7 Cyclic nucleotide-gated ion channel 1-like isoform X24.2e-4483.33Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RTTI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

A0A5D3E6K4 Cyclic nucleotide-gated ion channel 1-like isoform X13.2e-4482.46Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ
        +VPMLKEFEEEKL ++MKDMKPMVF E SYIIREGE +EQMLLFTKGMGL FSKSTG RTTI+TFGKGDLFGEQLL WA  NL   EIPL +CTLKTQTQ
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQ

Query:  MEAFTLKAIDPQYH
        MEAF LKAIDPQYH
Subjt:  MEAFTLKAIDPQYH

SwissProt top hitse value%identityAlignment
O65717 Cyclic nucleotide-gated ion channel 11.1e-1233.04Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST--FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQ
        +VPM ++ +E+ L+ +   ++P+++ E SYI+REG+ V++ML   +G  L  + + G    +++   G GD  GE+LL WA++    S +P+   T++  
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST--FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQ

Query:  TQMEAFTLKAIDPQY
         ++EAF LKA D ++
Subjt:  TQMEAFTLKAIDPQY

O82226 Probable cyclic nucleotide-gated ion channel 62.2e-1034.23Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+ +  +E  L+ + + +KP +F E SY++REG+ V +ML   +G  L+   + G R+     S   +GD  G++LL WA++    S +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKA
         T++EAF L A
Subjt:  QTQMEAFTLKA

Q9FXH6 Putative cyclic nucleotide-gated ion channel 82.2e-1034.23Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+    +E  L+ + + +KP ++ E +YI+REG+ V +ML   +G  L+   + G R+     G   +GD  GE+LL WA++    S +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKA
         T++EAF L+A
Subjt:  QTQMEAFTLKA

Q9LD40 Putative cyclic nucleotide-gated ion channel 133.8e-1035.4Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST---FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+ +  +E+ L+ V   +KP+++ E SY IREG+ VE+ML   +G  L  + + G RT           D  GE LL WA++    S  P+   T++ 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST---FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKAID
         T++EAF L A D
Subjt:  QTQMEAFTLKAID

Q9S9N5 Putative cyclic nucleotide-gated ion channel 71.7e-1034.23Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+    +E  L+ + + +KP +F E +YI+REG+ V +M+   +G  L+   + G R+     G   +GD  GE+LL WA++    S +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKA
         T++EAF L+A
Subjt:  QTQMEAFTLKA

Arabidopsis top hitse value%identityAlignment
AT1G15990.1 cyclic nucleotide gated channel 71.2e-1134.23Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+    +E  L+ + + +KP +F E +YI+REG+ V +M+   +G  L+   + G R+     G   +GD  GE+LL WA++    S +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKA
         T++EAF L+A
Subjt:  QTQMEAFTLKA

AT1G19780.1 cyclic nucleotide gated channel 81.6e-1134.23Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+    +E  L+ + + +KP ++ E +YI+REG+ V +ML   +G  L+   + G R+     G   +GD  GE+LL WA++    S +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKA
         T++EAF L+A
Subjt:  QTQMEAFTLKA

AT2G23980.1 cyclic nucleotide-gated channel 61.6e-1134.23Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+ +  +E  L+ + + +KP +F E SY++REG+ V +ML   +G  L+   + G R+     S   +GD  G++LL WA++    S +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKA
         T++EAF L A
Subjt:  QTQMEAFTLKA

AT2G28260.1 cyclic nucleotide-gated channel 152.7e-1133.62Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART---TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT
        +VP+  + +E  L+ + + +KP +  E ++++REG+ V +ML   +G  L    + G RT        G GD  GE+LL WA++   V  +P    T+K 
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART---TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKT

Query:  QTQMEAFTLKAIDPQY
          ++EAF LKA D Q+
Subjt:  QTQMEAFTLKAIDPQY

AT5G53130.1 cyclic nucleotide gated channel 17.6e-1433.04Show/hide
Query:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST--FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQ
        +VPM ++ +E+ L+ +   ++P+++ E SYI+REG+ V++ML   +G  L  + + G    +++   G GD  GE+LL WA++    S +P+   T++  
Subjt:  QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST--FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQ

Query:  TQMEAFTLKAIDPQY
         ++EAF LKA D ++
Subjt:  TQMEAFTLKAIDPQY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCATTCGCAGGTTCCAATGCTTAAAGAATTTGAAGAGGAGAAGTTAGAAGAGGTGATGAAGGATATGAAGCCAATGGTTTTTGCAGAGTATAGCTATATTATTCG
AGAGGGGGAGCGTGTTGAGCAGATGCTACTATTCACGAAAGGTATGGGATTGAAATTTAGCAAGAGCACTGGAGCTAGAACAACGATTAGCACTTTTGGAAAAGGTGATT
TATTTGGGGAGCAGCTACTGATTTGGGCAGTGGAAAATCTTCATGTGTCTGAAATTCCTTTGTTCGAATGTACACTCAAGACACAGACCCAAATGGAAGCCTTCACTCTT
AAGGCTATTGATCCACAATATCATATCATACCAAGTGGGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCATTCGCAGGTTCCAATGCTTAAAGAATTTGAAGAGGAGAAGTTAGAAGAGGTGATGAAGGATATGAAGCCAATGGTTTTTGCAGAGTATAGCTATATTATTCG
AGAGGGGGAGCGTGTTGAGCAGATGCTACTATTCACGAAAGGTATGGGATTGAAATTTAGCAAGAGCACTGGAGCTAGAACAACGATTAGCACTTTTGGAAAAGGTGATT
TATTTGGGGAGCAGCTACTGATTTGGGCAGTGGAAAATCTTCATGTGTCTGAAATTCCTTTGTTCGAATGTACACTCAAGACACAGACCCAAATGGAAGCCTTCACTCTT
AAGGCTATTGATCCACAATATCATATCATACCAAGTGGGACATAA
Protein sequenceShow/hide protein sequence
MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTL
KAIDPQYHIIPSGT