; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G27310 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G27310
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr3:24901159..24908507
RNA-Seq ExpressionCSPI03G27310
SyntenyCSPI03G27310
Gene Ontology termsNA
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR005162 - Retrotransposon gag domain
IPR010920 - LSM domain superfamily
IPR033871 - Sm-like protein LSm5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058816.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-11459.62Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q    K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES E+   +E    E VE+N L
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL

KAA0059481.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-11460.11Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q   +K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEES-KEDEGKTEENTGEVVELNHLD
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES +E EG    NTG  VE+N L+
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEES-KEDEGKTEENTGEVVELNHLD

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-11460.11Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q   +K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKED-EGKTEENTGEVVELNHLD
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES E+ EG    NTG  VE+N L+
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKED-EGKTEENTGEVVELNHLD

XP_031744430.1 uncharacterized protein LOC116405043 [Cucumis sativus]1.3e-14875.48Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEERMEGTEKE+LSMKEMLLEMKKSMERL EELRENHSYK+RDES TSDGS MKLKGKVEESEV N+VNG+ VD+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EKI+V VVSFG +EVDWYRWT+NRK+ ESWEDLKG MFDFFKDSGQ SLV RLI+IQQDGSYS+YVKKFVTYSAPLPHMEESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+PNLQ EVVSRYP+TLEDCMREAQLVNDRN+AM+LTK +GR +EP+KKEEYAGKIQ+GT+K ++R+T+FP+KQVTIPIK +YQK+EPPIKRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHLDLA
        DAE RS+LDKGLCF CNE+YT GHRCRVKEK+ELMLFIMNEEESKE+EGK EE  GE VELNHLD A
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHLDLA

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]4.1e-12365.03Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQ+E+R++GTEKEI+ +KEMLLEMKK+MER+ E+LRENHSYK+R+ES TSDGS+MKLKGK EE++V N+ N    D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     +TEK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MFDFFKD+GQ SLV RLI+I+QDGSY+DYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+PNLQ EVVSR P TLE+CMREAQLVNDRNLA++ +KA+G     +K E    K  EG  K   RKT FPLKQVTIPIK NYQKSEPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHLDL
        DAE R++LDKGLCF CNERY+ GHRC++K+K+ELMLFIMNEEES EDE +TEE   EV+ELN L L
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHLDL

TrEMBL top hitse value%identityAlignment
A0A5A7UXB4 Ty3/gypsy retrotransposon protein7.5e-11559.62Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q    K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES E+   +E    E VE+N L
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL

A0A5A7V194 Ty3/gypsy retrotransposon protein7.5e-11560.11Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q   +K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEES-KEDEGKTEENTGEVVELNHLD
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES +E EG    NTG  VE+N L+
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEES-KEDEGKTEENTGEVVELNHLD

A0A5D3BBH7 Ty3/gypsy retrotransposon protein1.3e-11459.62Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q    K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES E+   +E    E VE+N L
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL

A0A5D3DZK6 Ty3/gypsy retrotransposon protein1.3e-11459.62Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q    K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES E+   +E    E VE+N L
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEGKTEENTGEVVELNHL

A0A5D3E325 Ty3/gypsy retrotransposon protein5.8e-11560.11Show/hide
Query:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------
        MAQRQMEER+EGTEKE+LS+KEM+LEMKKSM+RL +ELR+  SYK+++ES TSDGSIMK+KGK+EE++V+ +++ + +D+                    
Subjt:  MAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQ--------------------

Query:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR
                     + EK+KV VVSFG DEVDWYRW++NR++ ESWEDLK  MF+FF+D+GQ SL  RLI+IQQ+GSYSDYVKKFV YSAPLPHM ESVLR
Subjt:  -------------KTEKIKVTVVSFGLDEVDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLR

Query:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS
        DAFLTGL+P LQ EV+SR+PQTLEDCM  AQLVNDRNLA++L +A+  I+EP++ E    K+Q   +K  +RK  F +KQ+TIP+K +YQK EPP+KRLS
Subjt:  DAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLAMRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLS

Query:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKED-EGKTEENTGEVVELNHLD
        DAE R++LDKGLCF CNE+Y+ GHRC++KEK+ELMLFI+NEEES E+ EG    NTG  VE+N L+
Subjt:  DAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKED-EGKTEENTGEVVELNHLD

SwissProt top hitse value%identityAlignment
P62322 U6 snRNA-associated Sm-like protein LSm52.0e-2778.67Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q2HJH0 U6 snRNA-associated Sm-like protein LSm52.0e-2778.67Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q5R628 U6 snRNA-associated Sm-like protein LSm52.0e-2778.67Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q9FKB0 Sm-like protein LSM57.4e-3594.81Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm52.0e-2778.67Show/hide
Query:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        TNPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +
Subjt:  TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.4e-0437.5Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L +ILL G+NI +
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.1e-0437.5Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L +ILL G+NI +
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI

AT5G48870.1 Small nuclear ribonucleoprotein family protein5.3e-3694.81Show/hide
Query:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI
        MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAI
Subjt:  MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCAATCCTTCGCAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATAATGAAGGGCGACAAAGAGCTCGTTGGAACTCTCAG
AGGATTTGATGTTTATGTCAACATGGTTCTTGAGGATGTTACTGAATATGAGATCACTGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ACATTGCCATTACAACACTAGCCAACATGATTCTGTCACGCTTTCCATTGTCTGCGCCTCCACACGCAGCCGCTGGGGACCTCCAGGACCAGCCTAACAAGTTCAAATCA
TGTCGACCAATCCTTCTTTGCCACATAATTCTGTTCAACCACCACCGCTTCTGCTGTCAAACTTGTATGTGCTGCCACCCACTGATTCTATTGCAAAACCCAGTTATCAT
TTCGAGGTTAGGAATCCTCAAATTCACTCAACATTTGAGGTTGATTGCAGCAATTGAGACTATCTTAGGGGTGAAATCCAGCACTTCTGGTCACGACCATCGTACACCTT
TACCCATAGAATTAGTCTGGAATAGTCCTAGTGATGGTGTGCAGTACTCTAGAATTGAAGAGATTGACGAGATTTGTGACTTTCTTGTTGGTCTTAACCCTATGTTTTAT
GTGGTTCGTGTGCATATATTGAGCCAAAGACCGACTCTCTCCCTAGTGGAGGTCTGTTTTAAAATCTGCCTCGAGGAGGATCATACAAGTGCTATGAATATTTTGGCAAC
TTCTGCTATTGACTCCGTTGCTTTTAGTGCAAGATCCTCTACTAGCGATAGTAACAAGAACACTAGAAAACCAGCTCCAGTTTGTGAGCATTGCAAGAAGCGACAAGATA
CGAAGGAGCAGTATTGGAAGTTACAGTTGTCCTCAGGAGGTAAGAAACTCTCTCCCAACGACAAACAAAACACAAAGCAGGCTTATGTGACTGAGTTTGCTGAACCTTCT
CAACCACTTGATTCACATGAAAACCAGACCGATCATAGTCCCGCTACTCTAGGCGCCATTGTCCAATTAAAATTGCATACGACTCCTTGGCCCCCCATTTCTGGGAAGGG
GAAGATTTCTCCCTGTGCAGGATTCTCCCTACTTAATGTTTTGCATGTGTCCAAAATTTCTTATAGTCCGGTTAAGGAGGGCAGCTGTAGCCGTAGAGGGGGTATCCTTC
TTGTAAAGGGTGCTGGTATGTTTCCTTTGTTATTTCCTTTCTCTGTTATATTTCATAGTGTGGCTCCATTGTTTGATGTTTTATTTGATATTGTTGTTAGAACTCTGACA
TTTGGTATCAGAGCCCGAAAACTGGGGGTTGTTACGCGATTCATGGCACAAAGGCAGATGGAGGAAAGAATGGAAGGAACTGAGAAGGAGATATTGAGCATGAAGGAAAT
GTTATTGGAGATGAAAAAGTCTATGGAAAGACTGATGGAGGAACTAAGGGAGAATCATAGCTATAAGCAAAGGGATGAATCCGAGACATCAGATGGATCGATCATGAAGT
TAAAAGGGAAAGTAGAGGAATCGGAAGTCAGTAATGATGTTAACGGAAACACTGTGGATCAAAAAACAGAGAAGATCAAAGTGACGGTGGTCAGTTTTGGGTTGGATGAA
GTGGATTGGTACCGGTGGACGAATAATAGGAAAAGAGCAGAGTCATGGGAAGACTTGAAAGGAATGATGTTTGACTTTTTCAAGGACTCAGGACAAATGAGTTTAGTGAC
ACGTTTGATTAAGATTCAACAAGACGGCTCCTACAGTGATTATGTGAAGAAATTTGTCACATATTCAGCTCCTCTACCTCACATGGAAGAGAGTGTGTTGCGAGATGCTT
TTCTAACCGGTTTAAAACCTAACCTTCAAGTAGAAGTCGTTAGCCGATATCCTCAAACGTTGGAAGATTGTATGAGAGAGGCTCAACTAGTCAATGATCGCAATTTAGCA
ATGAGATTGACTAAGGCCGATGGGAGGATAATGGAACCACAGAAAAAAGAAGAGTACGCAGGCAAAATCCAAGAAGGAACAAACAAATGTTTCGTGAGGAAGACAAACTT
TCCCCTGAAACAGGTAACCATACCCATTAAGGTTAATTACCAAAAGAGTGAACCACCTATCAAACGCCTGTCAGACGCAGAGTTGAGGTCCAAATTGGACAAGGGCTTAT
GTTTCAATTGCAATGAGAGATATACATCAGGACACAGATGTAGAGTGAAGGAAAAAAAGGAATTGATGTTATTCATCATGAATGAAGAAGAGAGTAAGGAAGACGAAGGT
AAGACAGAAGAGAACACAGGAGAGGTGGTGGAATTAAACCATCTAGATCTTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCAATCCTTCGCAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATAATGAAGGGCGACAAAGAGCTCGTTGGAACTCTCAG
AGGATTTGATGTTTATGTCAACATGGTTCTTGAGGATGTTACTGAATATGAGATCACTGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ACATTGCCATTACAACACTAGCCAACATGATTCTGTCACGCTTTCCATTGTCTGCGCCTCCACACGCAGCCGCTGGGGACCTCCAGGACCAGCCTAACAAGTTCAAATCA
TGTCGACCAATCCTTCTTTGCCACATAATTCTGTTCAACCACCACCGCTTCTGCTGTCAAACTTGTATGTGCTGCCACCCACTGATTCTATTGCAAAACCCAGTTATCAT
TTCGAGGTTAGGAATCCTCAAATTCACTCAACATTTGAGGTTGATTGCAGCAATTGAGACTATCTTAGGGGTGAAATCCAGCACTTCTGGTCACGACCATCGTACACCTT
TACCCATAGAATTAGTCTGGAATAGTCCTAGTGATGGTGTGCAGTACTCTAGAATTGAAGAGATTGACGAGATTTGTGACTTTCTTGTTGGTCTTAACCCTATGTTTTAT
GTGGTTCGTGTGCATATATTGAGCCAAAGACCGACTCTCTCCCTAGTGGAGGTCTGTTTTAAAATCTGCCTCGAGGAGGATCATACAAGTGCTATGAATATTTTGGCAAC
TTCTGCTATTGACTCCGTTGCTTTTAGTGCAAGATCCTCTACTAGCGATAGTAACAAGAACACTAGAAAACCAGCTCCAGTTTGTGAGCATTGCAAGAAGCGACAAGATA
CGAAGGAGCAGTATTGGAAGTTACAGTTGTCCTCAGGAGGTAAGAAACTCTCTCCCAACGACAAACAAAACACAAAGCAGGCTTATGTGACTGAGTTTGCTGAACCTTCT
CAACCACTTGATTCACATGAAAACCAGACCGATCATAGTCCCGCTACTCTAGGCGCCATTGTCCAATTAAAATTGCATACGACTCCTTGGCCCCCCATTTCTGGGAAGGG
GAAGATTTCTCCCTGTGCAGGATTCTCCCTACTTAATGTTTTGCATGTGTCCAAAATTTCTTATAGTCCGGTTAAGGAGGGCAGCTGTAGCCGTAGAGGGGGTATCCTTC
TTGTAAAGGGTGCTGGTATGTTTCCTTTGTTATTTCCTTTCTCTGTTATATTTCATAGTGTGGCTCCATTGTTTGATGTTTTATTTGATATTGTTGTTAGAACTCTGACA
TTTGGTATCAGAGCCCGAAAACTGGGGGTTGTTACGCGATTCATGGCACAAAGGCAGATGGAGGAAAGAATGGAAGGAACTGAGAAGGAGATATTGAGCATGAAGGAAAT
GTTATTGGAGATGAAAAAGTCTATGGAAAGACTGATGGAGGAACTAAGGGAGAATCATAGCTATAAGCAAAGGGATGAATCCGAGACATCAGATGGATCGATCATGAAGT
TAAAAGGGAAAGTAGAGGAATCGGAAGTCAGTAATGATGTTAACGGAAACACTGTGGATCAAAAAACAGAGAAGATCAAAGTGACGGTGGTCAGTTTTGGGTTGGATGAA
GTGGATTGGTACCGGTGGACGAATAATAGGAAAAGAGCAGAGTCATGGGAAGACTTGAAAGGAATGATGTTTGACTTTTTCAAGGACTCAGGACAAATGAGTTTAGTGAC
ACGTTTGATTAAGATTCAACAAGACGGCTCCTACAGTGATTATGTGAAGAAATTTGTCACATATTCAGCTCCTCTACCTCACATGGAAGAGAGTGTGTTGCGAGATGCTT
TTCTAACCGGTTTAAAACCTAACCTTCAAGTAGAAGTCGTTAGCCGATATCCTCAAACGTTGGAAGATTGTATGAGAGAGGCTCAACTAGTCAATGATCGCAATTTAGCA
ATGAGATTGACTAAGGCCGATGGGAGGATAATGGAACCACAGAAAAAAGAAGAGTACGCAGGCAAAATCCAAGAAGGAACAAACAAATGTTTCGTGAGGAAGACAAACTT
TCCCCTGAAACAGGTAACCATACCCATTAAGGTTAATTACCAAAAGAGTGAACCACCTATCAAACGCCTGTCAGACGCAGAGTTGAGGTCCAAATTGGACAAGGGCTTAT
GTTTCAATTGCAATGAGAGATATACATCAGGACACAGATGTAGAGTGAAGGAAAAAAAGGAATTGATGTTATTCATCATGAATGAAGAAGAGAGTAAGGAAGACGAAGGT
AAGACAGAAGAGAACACAGGAGAGGTGGTGGAATTAAACCATCTAGATCTTGCATAA
Protein sequenceShow/hide protein sequence
MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAITTLANMILSRFPLSAPPHAAAGDLQDQPNKFKS
CRPILLCHIILFNHHRFCCQTCMCCHPLILLQNPVIISRLGILKFTQHLRLIAAIETILGVKSSTSGHDHRTPLPIELVWNSPSDGVQYSRIEEIDEICDFLVGLNPMFY
VVRVHILSQRPTLSLVEVCFKICLEEDHTSAMNILATSAIDSVAFSARSSTSDSNKNTRKPAPVCEHCKKRQDTKEQYWKLQLSSGGKKLSPNDKQNTKQAYVTEFAEPS
QPLDSHENQTDHSPATLGAIVQLKLHTTPWPPISGKGKISPCAGFSLLNVLHVSKISYSPVKEGSCSRRGGILLVKGAGMFPLLFPFSVIFHSVAPLFDVLFDIVVRTLT
FGIRARKLGVVTRFMAQRQMEERMEGTEKEILSMKEMLLEMKKSMERLMEELRENHSYKQRDESETSDGSIMKLKGKVEESEVSNDVNGNTVDQKTEKIKVTVVSFGLDE
VDWYRWTNNRKRAESWEDLKGMMFDFFKDSGQMSLVTRLIKIQQDGSYSDYVKKFVTYSAPLPHMEESVLRDAFLTGLKPNLQVEVVSRYPQTLEDCMREAQLVNDRNLA
MRLTKADGRIMEPQKKEEYAGKIQEGTNKCFVRKTNFPLKQVTIPIKVNYQKSEPPIKRLSDAELRSKLDKGLCFNCNERYTSGHRCRVKEKKELMLFIMNEEESKEDEG
KTEENTGEVVELNHLDLA