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CSPI03G27420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G27420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationChr3:25036671..25037561
RNA-Seq ExpressionCSPI03G27420
SyntenyCSPI03G27420
Gene Ontology termsGO:0030833 - regulation of actin filament polymerization (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031267 - small GTPase binding (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062399.1 THO complex subunit 1 [Cucumis melo var. makuwa]6.3e-3871.56Show/hide
Query:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH
        + LA KFPNLFS++LNKDA+VA+CWC   H W LGLRRN+LDN++ NVA+ LEILHSWAP    DSL WTPN NG+F TKSTFLNLTKR P+IAV LIRH
Subjt:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH

Query:  IWKNKIPKK
        IWK KI KK
Subjt:  IWKNKIPKK

KAA0065914.1 uncharacterized protein E6C27_scaffold538G00970 [Cucumis melo var. makuwa]1.1e-3767.54Show/hide
Query:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH
        + LAE FPNLFSL+LN DA+VA+CWC  THSW L LRRN+LDN++ NVAS LEILHSWAP    DS  WTPN+NG+FT K+TFL+LTKR P+IAV L RH
Subjt:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH

Query:  IWKNKIPKKVKFFL
        IW+ KIPKK +  L
Subjt:  IWKNKIPKKVKFFL

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]9.7e-4771.21Show/hide
Query:  EIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCC
        E+ NVA+ LE L SWAP    DSL WT N NG+FT KSTFL LTK  P+I   LI HIWK KI K+VKFFLWSLAYRSLNTH+K++K  Q+T++SPSMCC
Subjt:  EIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCC

Query:  LCAKDEETLDHLFLHCPFTKKAWNTLFGIFDL
        LC K+EETLDHLFLHC FTKKAWNTLF IFDL
Subjt:  LCAKDEETLDHLFLHCPFTKKAWNTLFGIFDL

TYK10100.1 protein PIR [Cucumis melo var. makuwa]6.3e-3874.53Show/hide
Query:  EKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKN
        EKF NLFSL LNKDA+VA+CWC  TH W LGLRRN+LDNE+ NVAS LEILHSWAP    DSL WT  +NG+FT KSTFLNLTKR P+IAV LIRHIWK 
Subjt:  EKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKN

Query:  KIPKKV
        KIPKK+
Subjt:  KIPKKV

TYK31264.1 ion channel CASTOR-like [Cucumis melo var. makuwa]2.3e-3270.3Show/hide
Query:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH
        + LAEKF NLFSL+LNKDA VAE WC  THSW LGL RN+LDNE+ NVAS LEIL SWAP+   D+L WTPN+N +FT KSTF+NLTKR P+IAV LI H
Subjt:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH

Query:  I
        I
Subjt:  I

TrEMBL top hitse value%identityAlignment
A0A5A7V9M3 THO complex subunit 13.0e-3871.56Show/hide
Query:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH
        + LA KFPNLFS++LNKDA+VA+CWC   H W LGLRRN+LDN++ NVA+ LEILHSWAP    DSL WTPN NG+F TKSTFLNLTKR P+IAV LIRH
Subjt:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH

Query:  IWKNKIPKK
        IWK KI KK
Subjt:  IWKNKIPKK

A0A5A7VF37 Uncharacterized protein5.2e-3867.54Show/hide
Query:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH
        + LAE FPNLFSL+LN DA+VA+CWC  THSW L LRRN+LDN++ NVAS LEILHSWAP    DS  WTPN+NG+FT K+TFL+LTKR P+IAV L RH
Subjt:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH

Query:  IWKNKIPKKVKFFL
        IW+ KIPKK +  L
Subjt:  IWKNKIPKKVKFFL

A0A5D3C7R2 DUF21 domain-containing protein4.7e-4771.21Show/hide
Query:  EIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCC
        E+ NVA+ LE L SWAP    DSL WT N NG+FT KSTFL LTK  P+I   LI HIWK KI K+VKFFLWSLAYRSLNTH+K++K  Q+T++SPSMCC
Subjt:  EIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCC

Query:  LCAKDEETLDHLFLHCPFTKKAWNTLFGIFDL
        LC K+EETLDHLFLHC FTKKAWNTLF IFDL
Subjt:  LCAKDEETLDHLFLHCPFTKKAWNTLFGIFDL

A0A5D3CFH0 Protein PIR3.0e-3874.53Show/hide
Query:  EKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKN
        EKF NLFSL LNKDA+VA+CWC  TH W LGLRRN+LDNE+ NVAS LEILHSWAP    DSL WT  +NG+FT KSTFLNLTKR P+IAV LIRHIWK 
Subjt:  EKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRHIWKN

Query:  KIPKKV
        KIPKK+
Subjt:  KIPKKV

A0A5D3E5N6 Ion channel CASTOR-like1.1e-3270.3Show/hide
Query:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH
        + LAEKF NLFSL+LNKDA VAE WC  THSW LGL RN+LDNE+ NVAS LEIL SWAP+   D+L WTPN+N +FT KSTF+NLTKR P+IAV LI H
Subjt:  DALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKRPPNIAVTLIRH

Query:  I
        I
Subjt:  I

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.6e-0527.62Show/hide
Query:  DSLNWTPNMNGNFTTKSTFLNLTKRP---PNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCCLCAKDEETLDHLFLHCPF
        D L+W  + +G F+ +S +  LT      PN+A +    +WK ++P++VK FLW +  +++ T E+  ++    L + ++C +C    E++ H+   CP 
Subjt:  DSLNWTPNMNGNFTTKSTFLNLTKRP---PNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCCLCAKDEETLDHLFLHCPF

Query:  TKKAW
            W
Subjt:  TKKAW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAAAAGATCTCCACGAACCTTGTTGGGCAGCTGCAATCCTTTCTAAACCTGCAAAATGATGCTCTTGCAGAAAAATTCCCTAACTTATTCTCCTTGGCGCTGAA
TAAGGATGCTTATGTGGCAGAATGCTGGTGTACTGCTACTCATTCTTGGAAATTGGGCCTTAGAAGAAACTTGCTCGACAACGAGATTGCCAATGTGGCTTCAGCTCTAG
AAATTCTGCATTCTTGGGCCCCCATTGCTAGGAATGATAGTCTTAACTGGACTCCTAATATGAATGGCAACTTCACTACAAAATCTACTTTCCTTAACTTAACTAAGAGA
CCCCCCAACATTGCTGTTACCTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGA
GAAACTTAAAAAAAAAATTCAGAACACATTGATTAGCCCCTCGATGTGCTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATCTATTTCTACATTGTCCCTTCACAA
AAAAAGCTTGGAACACTCTGTTTGGTATTTTTGACTTGGAGCTCTGCCTTCCTAGCAAGATTGATAGTTGGATGATTGAAGGTCTTAATATTAGAGGTTACAGCCCTAAA
GGAAATATCTTATGGAAATGTGCGACGCGTTCCCTTTTCCTCTTGGTGGAGTACGAATTACACCAAACACTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGAAAAGATCTCCACGAACCTTGTTGGGCAGCTGCAATCCTTTCTAAACCTGCAAAATGATGCTCTTGCAGAAAAATTCCCTAACTTATTCTCCTTGGCGCTGAA
TAAGGATGCTTATGTGGCAGAATGCTGGTGTACTGCTACTCATTCTTGGAAATTGGGCCTTAGAAGAAACTTGCTCGACAACGAGATTGCCAATGTGGCTTCAGCTCTAG
AAATTCTGCATTCTTGGGCCCCCATTGCTAGGAATGATAGTCTTAACTGGACTCCTAATATGAATGGCAACTTCACTACAAAATCTACTTTCCTTAACTTAACTAAGAGA
CCCCCCAACATTGCTGTTACCTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGA
GAAACTTAAAAAAAAAATTCAGAACACATTGATTAGCCCCTCGATGTGCTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATCTATTTCTACATTGTCCCTTCACAA
AAAAAGCTTGGAACACTCTGTTTGGTATTTTTGACTTGGAGCTCTGCCTTCCTAGCAAGATTGATAGTTGGATGATTGAAGGTCTTAATATTAGAGGTTACAGCCCTAAA
GGAAATATCTTATGGAAATGTGCGACGCGTTCCCTTTTCCTCTTGGTGGAGTACGAATTACACCAAACACTTTTGTAA
Protein sequenceShow/hide protein sequence
MYEKISTNLVGQLQSFLNLQNDALAEKFPNLFSLALNKDAYVAECWCTATHSWKLGLRRNLLDNEIANVASALEILHSWAPIARNDSLNWTPNMNGNFTTKSTFLNLTKR
PPNIAVTLIRHIWKNKIPKKVKFFLWSLAYRSLNTHEKLKKKIQNTLISPSMCCLCAKDEETLDHLFLHCPFTKKAWNTLFGIFDLELCLPSKIDSWMIEGLNIRGYSPK
GNILWKCATRSLFLLVEYELHQTLL