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CSPI03G27620 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G27620
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionE3 ubiquitin-protein ligase RNF4-like isoform X1
Genome locationChr3:25172951..25173311
RNA-Seq ExpressionCSPI03G27620
SyntenyCSPI03G27620
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068067.1 E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo var. makuwa]1.7e-3297.5Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAG+FI AGGAL
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL

XP_004144388.1 E3 ubiquitin-protein ligase RNF4 [Cucumis sativus]1.3e-27100Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

XP_008460369.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo]1.3e-27100Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

XP_008460373.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo]1.3e-27100Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

XP_038888129.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida]1.5e-2594.29Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQLR Q+AQVNQQQ VQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

TrEMBL top hitse value%identityAlignment
A0A0A0LBP4 Uncharacterized protein1.3e-33100Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL

A0A1S3CBW2 E3 ubiquitin-protein ligase RNF4-like isoform X26.1e-28100Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

A0A1S3CCB4 E3 ubiquitin-protein ligase RNF4-like isoform X16.1e-28100Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

A0A5D3DQU9 E3 ubiquitin-protein ligase RNF4-like isoform X18.2e-3397.5Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL
        MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAG+FI AGGAL
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL

A0A6J1HQI7 E3 ubiquitin-protein ligase RNF4-like1.1e-2491.43Show/hide
Query:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA
        MPPTENRDQGETSQ   Q+AQVNQQQ VQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G07200.1 RING/U-box superfamily protein2.7e-0445.21Show/hide
Query:  RDQGETSQLRLQDAQVNQQQPVQPAM------IDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNVVDVDA
        R  G T      D QV  Q P  P +      I++ AI  DDDV+ES+A AFA+AKNKSR   R   VVDV++
Subjt:  RDQGETSQLRLQDAQVNQQQPVQPAM------IDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNVVDVDA

AT3G07200.2 RING/U-box superfamily protein2.7e-0445.21Show/hide
Query:  RDQGETSQLRLQDAQVNQQQPVQPAM------IDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNVVDVDA
        R  G T      D QV  Q P  P +      I++ AI  DDDV+ES+A AFA+AKNKSR   R   VVDV++
Subjt:  RDQGETSQLRLQDAQVNQQQPVQPAM------IDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNVVDVDA

AT5G48655.1 RING/U-box superfamily protein2.4e-0852.31Show/hide
Query:  QGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--VVDVDAG
        +G ++ +R     +   QP  P MID++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++G
Subjt:  QGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--VVDVDAG

AT5G48655.2 RING/U-box superfamily protein2.4e-0852.31Show/hide
Query:  QGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--VVDVDAG
        +G ++ +R     +   QP  P MID++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++G
Subjt:  QGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--VVDVDAG

AT5G48655.3 RING/U-box superfamily protein2.4e-0852.31Show/hide
Query:  QGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--VVDVDAG
        +G ++ +R     +   QP  P MID++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++G
Subjt:  QGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--VVDVDAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCAACTGAGAACCGAGATCAAGGAGAAACATCTCAACTGCGGCTTCAGGATGCACAGGTTAATCAACAACAGCCCGTACAACCTGCAATGATTGACATT
GAGGCCATTGATGATGATGTCATTGAATCATCTGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGAAATGCTAGGAAGAATGTAGTTGACGTGGATGCA
GGTTTGTTTATTTCAGCTGGTGGAGCACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACCAACTGAGAACCGAGATCAAGGAGAAACATCTCAACTGCGGCTTCAGGATGCACAGGTTAATCAACAACAGCCCGTACAACCTGCAATGATTGACATT
GAGGCCATTGATGATGATGTCATTGAATCATCTGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGAAATGCTAGGAAGAATGTAGTTGACGTGGATGCA
GGTTTGTTTATTTCAGCTGGTGGAGCACTATAG
Protein sequenceShow/hide protein sequence
MPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAGLFISAGGAL