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CSPI03G27630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G27630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionE3 ubiquitin-protein ligase RNF4-like
Genome locationChr3:25179642..25182799
RNA-Seq ExpressionCSPI03G27630
SyntenyCSPI03G27630
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004839 - ubiquitin activating enzyme activity (molecular function)
GO:0016746 - transferase activity, transferring acyl groups (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR017907 - Zinc finger, RING-type, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144388.1 E3 ubiquitin-protein ligase RNF4 [Cucumis sativus]5.7e-5498.21Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

XP_008460369.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo]1.3e-5397.32Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETST+CGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

XP_008460373.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo]8.3e-5399.08Show/hide
Query:  ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR
        ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETST+CGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR
Subjt:  ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR

Query:  VFLPGTSLE
        VFLPGTSLE
Subjt:  VFLPGTSLE

XP_022158096.1 E3 ubiquitin-protein ligase RNF4 isoform X2 [Momordica charantia]1.8e-4788.39Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSRVSNN RSKRRR+VSN+ +VNS+LLINLEASNSS+K KP PPKEPKFSCPICMGPLVEETSTRCGHIFCKACI+AAI VQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

XP_038888129.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida]2.5e-4991.07Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +E ++VSNNNRSKRRRDVSN+  VNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI VQ+KCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

TrEMBL top hitse value%identityAlignment
A0A1S3CBW2 E3 ubiquitin-protein ligase RNF4-like isoform X24.0e-5399.08Show/hide
Query:  ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR
        ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETST+CGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR
Subjt:  ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR

Query:  VFLPGTSLE
        VFLPGTSLE
Subjt:  VFLPGTSLE

A0A1S3CCB4 E3 ubiquitin-protein ligase RNF4-like isoform X16.2e-5497.32Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETST+CGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

A0A6J1E010 E3 ubiquitin-protein ligase RNF4 isoform X28.6e-4888.39Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSRVSNN RSKRRR+VSN+ +VNS+LLINLEASNSS+K KP PPKEPKFSCPICMGPLVEETSTRCGHIFCKACI+AAI VQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

A0A6J1HFU4 E3 ubiquitin-protein ligase RNF4-like2.5e-4787.5Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSR SNNNRSKRRRDV N+ +VNSDLLINLE SNSSMK K APPKEP FSCPICMGPLVEETSTRCGHIFCKACI+ AI VQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

A0A6J1HQI7 E3 ubiquitin-protein ligase RNF4-like8.6e-4888.39Show/hide
Query:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE
        D +ERSR SNNNRSKRRRDV N+ +VNSDLLINLEASNSSMK K APPKEP FSCPICMGPLVEETSTRCGHIFCKACI+ AI VQSKCPTCRKRVTAKE
Subjt:  DIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKE

Query:  LIRVFLPGTSLE
        LIRVFLPGTSLE
Subjt:  LIRVFLPGTSLE

SwissProt top hitse value%identityAlignment
B5DF45 TNF receptor-associated factor 67.9e-0653.33Show/hide
Query:  PPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI-GVQSKCP
        PP E K+ CPIC+  L E   T CGH FCKACI  +I     KCP
Subjt:  PPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI-GVQSKCP

P78317 E3 ubiquitin-protein ligase RNF42.7e-0638.33Show/hide
Query:  SCPICMGPLVE-------ETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFL
        SCPICM    E         ST CGH+FC  C+R ++   + CPTCRK++  K    +++
Subjt:  SCPICMGPLVE-------ETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFL

Q28DL4 TNF receptor-associated factor 66.0e-0644.64Show/hide
Query:  PPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI-GVQSKCPTCRKRVTAKEL
        PP E K+ CPIC+  L E   T CGH FCKACI  +I     KCP   + +   +L
Subjt:  PPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI-GVQSKCPTCRKRVTAKEL

Q3MV19 TNF receptor-associated factor 6-A3.5e-0644.64Show/hide
Query:  PPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI-GVQSKCPTCRKRVTAKEL
        PP E K+ CPIC+  L E   T CGH FCKACI  ++     KCP   + +  K+L
Subjt:  PPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAI-GVQSKCPTCRKRVTAKEL

Q9CQ29 RING finger protein 1512.9e-0844.07Show/hide
Query:  APPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRV
        A P + KF C +C G L   T   C HIFCK CI   +  Q+ CP CRK VT ++++ V
Subjt:  APPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRV

Arabidopsis top hitse value%identityAlignment
AT3G07200.1 RING/U-box superfamily protein3.9e-2457.14Show/hide
Query:  NRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGT
        NRS RRR  S++ SV+S   + L     S  V P P +EPKFSCPIC+ P  +E ST+CGHIFCK CI+ A+ +Q+KCPTCRK++T K+LIRVFLP T
Subjt:  NRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGT

AT3G07200.2 RING/U-box superfamily protein3.9e-2457.14Show/hide
Query:  NRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGT
        NRS RRR  S++ SV+S   + L     S  V P P +EPKFSCPIC+ P  +E ST+CGHIFCK CI+ A+ +Q+KCPTCRK++T K+LIRVFLP T
Subjt:  NRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGT

AT5G48655.1 RING/U-box superfamily protein2.7e-2554.95Show/hide
Query:  SRVSNNNRSKRRRDVSN-------RPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTA
        +R   N  +KRRR  S+         SVN +  +N+ +  S  K    PP+EPKF+CPICM P  EE ST+CGHIFCK CI+ AI  Q KCPTCRK+VTA
Subjt:  SRVSNNNRSKRRRDVSN-------RPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTA

Query:  KELIRVFLPGT
        KELIRVFLP T
Subjt:  KELIRVFLPGT

AT5G48655.2 RING/U-box superfamily protein2.7e-2554.95Show/hide
Query:  SRVSNNNRSKRRRDVSN-------RPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTA
        +R   N  +KRRR  S+         SVN +  +N+ +  S  K    PP+EPKF+CPICM P  EE ST+CGHIFCK CI+ AI  Q KCPTCRK+VTA
Subjt:  SRVSNNNRSKRRRDVSN-------RPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTA

Query:  KELIRVFLPGT
        KELIRVFLP T
Subjt:  KELIRVFLPGT

AT5G48655.3 RING/U-box superfamily protein2.7e-2554.95Show/hide
Query:  SRVSNNNRSKRRRDVSN-------RPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTA
        +R   N  +KRRR  S+         SVN +  +N+ +  S  K    PP+EPKF+CPICM P  EE ST+CGHIFCK CI+ AI  Q KCPTCRK+VTA
Subjt:  SRVSNNNRSKRRRDVSN-------RPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTA

Query:  KELIRVFLPGT
        KELIRVFLP T
Subjt:  KELIRVFLPGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTGGGGTTTTGTCACCACGCTCCGACACCATATTGAATAGAAGAAGACACGATATACAAGAGCGGAGCAGGGTGTCAAATAATAACCGGAGCAAGCGTAGGAG
AGATGTGTCTAATCGACCATCTGTAAATTCAGATTTATTAATCAATTTGGAAGCGAGCAACAGTTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAGTT
GTCCAATATGCATGGGTCCGTTAGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGTAAGGCATGCATCAGGGCTGCAATAGGCGTTCAGAGTAAATGCCCAACA
TGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTGGGGTTTTGTCACCACGCTCCGACACCATATTGAATAGAAGAAGACACGATATACAAGAGCGGAGCAGGGTGTCAAATAATAACCGGAGCAAGCGTAGGAG
AGATGTGTCTAATCGACCATCTGTAAATTCAGATTTATTAATCAATTTGGAAGCGAGCAACAGTTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAGTT
GTCCAATATGCATGGGTCCGTTAGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGTAAGGCATGCATCAGGGCTGCAATAGGCGTTCAGAGTAAATGCCCAACA
TGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTACGTGTAAGTTGCTTAATTGCTTGATCATTCTCTTGTTC
TCATGCTACAAAAAGTTGCATTGCCCCCATTTTTAATATGGGTCTGAAATTTCTTTCATGAATAACCTTTTCTCAATGGTCATACATATGGGTGAGATCTTTTTTTGTAT
TACCTTTAGGGTTTAGGATGGTTATTCAATTGTAATTTGGGGCGGCTGGAGCAGTTATGATTGTCGTAAGGGTACCAGTGTAATTGCCTTGTCTGTTTGAAAGGGCACTT
TAATTTATTGTATTTATGAAAAGTTTTATTACTGGGA
Protein sequenceShow/hide protein sequence
MAAGVLSPRSDTILNRRRHDIQERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPT
CRKRVTAKELIRVFLPGTSLE