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CSPI03G27700 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G27700
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSpc97 / Spc98 family of spindle pole body (SBP) component
Genome locationChr3:25222523..25224791
RNA-Seq ExpressionCSPI03G27700
SyntenyCSPI03G27700
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005319 - lipid transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN53863.2 hypothetical protein Csa_019174 [Cucumis sativus]8.9e-3988Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
        MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDSNLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK

XP_008450999.1 PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo]4.6e-3592.22Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSRE
        MLVLQRAKAIGHENLAEKFDL+TLRAIGFVLMEHLKG+LRTSDVSDLSQS T NACNLLDSN+EKILSIDEIMASICSDRRKKPGKR R+
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSRE

XP_008460383.1 PREDICTED: uncharacterized protein LOC103499220 [Cucumis melo]4.6e-3583.51Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK
        MLVLQRAKAIGHENLAEKFDL+TLR IGFVLMEHLKG+LRTSDV+DLSQS  NACNLLDSNLEK L IDEIM SIC DRRKKPGKR REKVD   ++
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK

XP_011651663.2 uncharacterized protein LOC101210446 [Cucumis sativus]5.8e-46100Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
        MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK

Query:  S
        S
Subjt:  S

XP_011653427.1 uncharacterized protein LOC105435221 [Cucumis sativus]8.9e-3988Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
        MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDSNLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK

TrEMBL top hitse value%identityAlignment
A0A0A0KW48 Uncharacterized protein4.3e-3988Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
        MLVLQRAKA+GHENLAEKFDL+  RAIGFVLMEHLKG+LRTSDVSDLSQS  NACNLLDSNLEKILSIDEIMASICSDRRKKPGKR +EKVD  YKKN K
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK

A0A0A0LBP9 Uncharacterized protein2.8e-46100Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
        MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGK

Query:  S
        S
Subjt:  S

A0A1S3BQH9 uncharacterized protein LOC1034924132.2e-3592.22Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSRE
        MLVLQRAKAIGHENLAEKFDL+TLRAIGFVLMEHLKG+LRTSDVSDLSQS T NACNLLDSN+EKILSIDEIMASICSDRRKKPGKR R+
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSRE

A0A1S3CBX7 uncharacterized protein LOC1034992202.2e-3583.51Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK
        MLVLQRAKAIGHENLAEKFDL+TLR IGFVLMEHLKG+LRTSDV+DLSQS  NACNLLDSNLEK L IDEIM SIC DRRKKPGKR REKVD   ++
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKK

A0A5A7UQA1 Uncharacterized protein3.8e-3591.11Show/hide
Query:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSRE
        MLVLQRAKAIGHENLAEKFDL+TLRAIGFVLMEHLKG+LRTSDVSDLSQS T NACNLLDSN+EKILSIDEIMASICSDRRKKPGKR ++
Subjt:  MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQS-TFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80245.1 Spc97 / Spc98 family of spindle pole body (SBP) component4.5e-1238.71Show/hide
Query:  LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSR
        L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + CNLL ++++  + I+EI+  IC ++ KK  ++ R
Subjt:  LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSR

AT1G80245.2 Spc97 / Spc98 family of spindle pole body (SBP) component4.5e-1238.71Show/hide
Query:  LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSR
        L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + CNLL ++++  + I+EI+  IC ++ KK  ++ R
Subjt:  LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSR

AT1G80245.3 Spc97 / Spc98 family of spindle pole body (SBP) component4.5e-1238.71Show/hide
Query:  LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSR
        L +QRAK  GH+ LA+KFDL+ LR++G VLMEH   + R  + + L+ S        + CNLL ++++  + I+EI+  IC ++ KK  ++ R
Subjt:  LVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQST------FNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSR

AT4G00695.1 FUNCTIONS IN: molecular_function unknown3.2e-1042.11Show/hide
Query:  LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGK------LRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDR-RKKPGKRSR
        LV++RAK  G E+L A+KFDL+ LR++G VLME+++ +      L  S V +L  S  ++CNLL ++++  + I+EI+  IC+ + +KK  KRSR
Subjt:  LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGK------LRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDR-RKKPGKRSR

AT4G00695.2 FUNCTIONS IN: molecular_function unknown3.2e-1042.11Show/hide
Query:  LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGK------LRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDR-RKKPGKRSR
        LV++RAK  G E+L A+KFDL+ LR++G VLME+++ +      L  S V +L  S  ++CNLL ++++  + I+EI+  IC+ + +KK  KRSR
Subjt:  LVLQRAKAIGHENL-AEKFDLRTLRAIGFVLMEHLKGK------LRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDR-RKKPGKRSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGTTCTCCAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGG
AAAACTTAGAACATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAA
GTATTTGCTCAGACAGAAGGAAGAAACCAGGAAAAAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
GTTTTTCTTCTTATTTTGATGTATGAGAAATTTTTACTATCATTTTTATTGACACAGTATTATGATGTATTTGGCAGGACCTGCTGATTAGCATTAAAATGCTAGTTCTC
CAACGTGCAAAAGCAATTGGTCATGAAAATTTAGCTGAGAAATTTGATTTGAGAACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAAAACTTAGAAC
ATCAGATGTTTCAGATCTATCTCAATCTACCTTTAATGCGTGCAACTTGTTAGATAGCAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGCAAGTATTTGCTCAG
ACAGAAGGAAGAAACCAGGAAAAAGGTCGCGGGAAAAGGTTGATTTGAGTTACAAGAAGAACGGCAAGTCGTGAATACTAGAAGTTCATCTGATTCATGGAAGTTGTCTT
TGCCAACCTGTCGGCATCATGCACAGCTTCCCACATTGCAAAACTTGGCAGGAATCATTCTAACAGCCATGGTGGTCGCCAACATTTTTGTTAGTTATAAATATAATAGT
GCAGGAAGCGAAAGGAATATGTATTAATGGTTTGAGCTATATCTTATTGAGCCATATCAGATGACAGGGAAAATTTTGTAGTTCCACTCCATTCATTTATTGTCACAAAA
CGAAGCATTTGAGAACAAATTCTCAAGTTTAGTCTTTATTCTTCTATTTGGTAAAATATAGTCTAATCTGTCATGATTAATTTTGTATCATACCTCTCTTTATAATATAA
ATTAATTTAAATTAGATGTTAA
Protein sequenceShow/hide protein sequence
MLVLQRAKAIGHENLAEKFDLRTLRAIGFVLMEHLKGKLRTSDVSDLSQSTFNACNLLDSNLEKILSIDEIMASICSDRRKKPGKRSREKVDLSYKKNGKS