CuGenDBv2

Gene ID	CSPI03G28000
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L35
Genome location	Chr3:25573241..25578987
RNA-Seq Expression	CSPI03G28000
Synteny	CSPI03G28000
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR021137 - Ribosomal protein L35 IPR037229 - Ribosomal protein L35 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144409.1 uncharacterized protein LOC101219338 [Cucumis sativus]

2.6e-83

100

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
        KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS

XP_008460439.1 PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo]

1.8e-76

95.24

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQI+ SVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRRNKRKPTTPATS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
        KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC+
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS

XP_022156090.1 uncharacterized protein LOC111023059 [Momordica charantia]

1.2e-69

85.03

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQ+++SVSSTRRIFHS+PSLYQPLHF+ NNL+SRS+FNAS QTHS LAAYQCIRSSPLPLSVVQVRHVSSR+RR +RKP TP TS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+MKDGSIKRR EGKRHNAH KSK+SKR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

XP_023532529.1 uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo]

1.9e-65

82.04

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR C+KLRSAAAKPSQI++SVSSTRRIFHSAPSLYQPLHFS NNL+SRSL NAS QTHS LAAYQCIRSS  PL  VQVRHVSSR+R+ +RKP TP TS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+ KDGSIKRR EGKRHNAH KSK++KR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

XP_038887770.1 uncharacterized protein LOC120077803 [Benincasa hispida]

8.3e-74

91.62

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQI+NS SSTRRIFHS+ SLYQPLHFS NNLNSRSLFNASQQTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRR KRK TTP TS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSKSKRSKR+LR+PAIVPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBT5 Uncharacterized protein

1.2e-83

100

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
        KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS

A0A1S3CDR4 uncharacterized protein LOC103499252

8.7e-77

95.24

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQI+ SVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRRNKRKPTTPATS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
        KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC+
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS

A0A6J1DPB8 uncharacterized protein LOC111023059

6.0e-70

85.03

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQ+++SVSSTRRIFHS+PSLYQPLHF+ NNL+SRS+FNAS QTHS LAAYQCIRSSPLPLSVVQVRHVSSR+RR +RKP TP TS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+MKDGSIKRR EGKRHNAH KSK+SKR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

A0A6J1ESK5 uncharacterized protein LOC111437349

2.6e-65

81.44

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR C+KLRSAAAKPSQI++SVSSTRRIFHSAPSLYQPLHFS NNL+SRSL NAS QTHS LAAYQCIRSS  PL  VQVRHVSSR+R+ +RKP TP TS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+ KDGSIKRR EGKRHNAH KSK++KR+LR+P  VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

A0A6J1KAA4 uncharacterized protein LOC111491530

4.5e-65

81.44

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Query:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR C+KLRSAAAKPSQI++SVSSTRRIFHS PSLYQPLHFS NNL+SRSL NAS QTHS LAAYQCIRSS  PL  VQVRHVSSR+R+ +RKP TP TS
Subjt:  MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+ KDGSIKRR EGKRHNAH KSK++KR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G45590.1 Ribosomal protein L35

1.5e-25

42.7

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Query:  MLRCCAKLRSAAAKPSQILNSV-SSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAA-----YQCIRSSPLPLSVVQVRHVSSRDR----RN
        M R C KLRS + + ++ L+   +S  R+ H +PS     H ++  L      N+++ +  P A         + ++ +P   VQVR+++S+++    + 
Subjt:  MLRCCAKLRSAAAKPSQILNSV-SSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAA-----YQCIRSSPLPLSVVQVRHVSSRDR----RN

Query:  KRKPTTPATSKLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS
        K +P TP TSK+KK K+K YSS+K RF  + DG+I+R  EGKRHNAH KSK+SKR+LR+P +VP AYAKVMKKLNFC+
Subjt:  KRKPTTPATSKLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS

Sequences

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CDS sequence

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ATGCTCAGGTGCTGTGCCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAATTTTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCA
GCCCCTCCATTTCTCTTCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCATCTCAACAAACTCATTCTCCGCTCGCCGCTTACCAGTGTATTCGCTCTTCGCCCTTGC
CTCTCTCTGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGGCGGAATAAGAGAAAGCCAACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAAGCTTAC
TCGTCTTACAAGTCTAGGTTTTGGTTGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGTCTAAAAGATCAAAGCGGAAACT
GAGAAAACCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCAGTTAG

mRNA sequence

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ATGCGCCACAATTTACCAATCATAGGTTCCTCTCTCTGAAAAATTTTCCTTCGCCCTTGGACTACGACGGCGACGACGATGCTCAGGTGCTGTGCCAAGCTCCGATCTGC
GGCGGCGAAGCCATCTCAAATTTTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCAGCCCCTCCATTTCTCTTCGAATAATTTGAATT
CCAGGTCCCTTTTCAATGCATCTCAACAAACTCATTCTCCGCTCGCCGCTTACCAGTGTATTCGCTCTTCGCCCTTGCCTCTCTCTGTTGTTCAAGTGCGGCATGTTTCA
TCAAGAGACCGGCGGAATAAGAGAAAGCCAACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAAGCTTACTCGTCTTACAAGTCTAGGTTTTGGTTGATGAA
GGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGTCTAAAAGATCAAAGCGGAAACTGAGAAAACCTGCCATTGTCCCATTAGCTTATG
CCAAGGTAATGAAGAAGCTCAACTTTTGCAGTTAGGTTATTTGGTTTGTTCCTTCTCTTGTACTATTATATGGATTGAACGAGCTTTAAACATCACCACTCAACTGCTTC
TTCTTTTTCCTTTTTTGGATTTAGAATTCAAAACTCTTAGAACAAACTAAGATGGACAATAATTATTTCTTAGTTATATGAAGTGATTATAGAGGTTGTTGTGATTTCAA
ATAGAGGTTTATCTTTTTATTGTCATCAAGTGTGAATTTTTGGGGTTCTTACCGGAGCTGATATGTAATTAGAATTACTTCAGGGGTATTGGAATGTGCGTGTAATTGGG
AGAGAATGGAAATGGAATTGTAAAACATGACAGTTAGAAAAAG

Protein sequence

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MLRCCAKLRSAAAKPSQILNSVSSTRRIFHSAPSLYQPLHFSSNNLNSRSLFNASQQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAY
SSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCS

CSPI03G28000 (gene) of Cucumber (PI 183967) v1 genome