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CSPI03G28290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G28290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr3:25901807..25902052
RNA-Seq ExpressionCSPI03G28290
SyntenyCSPI03G28290
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039263.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1555.56Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        M+Y N+Q + I E PN+Q Q E +  AEV++QLQ +PE+STRDR  LMW +M N+ DMKA  E+ NKLKLDY + +L+DNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-1354.32Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        M++ ND+ +AIVEW NVQ Q   A   EV++QLQ IPE+S  DR   M  LMCNV DMKA  +I ++LKLDY  I+ +DNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

KAA0065601.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-1555.56Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A  E+ ++LKLDY   MLEDNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

KGN58436.1 hypothetical protein Csa_000900 [Cucumis sativus]1.8e-3488.89Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        MKYVNDQSEAIVEWP+VQHQS+DAFYAEVMKQLQAIPE+ST DRRCLMW LMCNVHDMKALWEISN+LKLDY  +MLEDNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

TYK07171.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-1555.56Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A  E+ ++LKLDY   MLEDNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

TrEMBL top hitse value%identityAlignment
A0A0A0LEB9 Uncharacterized protein8.9e-3588.89Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        MKYVNDQSEAIVEWP+VQHQS+DAFYAEVMKQLQAIPE+ST DRRCLMW LMCNVHDMKALWEISN+LKLDY  +MLEDNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

A0A5A7V469 Retrotransposon protein2.5e-1354.32Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        M++ ND+ +AIVEW NVQ Q   A   EV++QLQ IPE+S  DR   M  LMCNV DMKA  +I ++LKLDY  I+ +DNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

A0A5A7VIQ2 Retrotransposon protein2.1e-1555.56Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A  E+ ++LKLDY   MLEDNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

A0A5D3BQR5 Retrotransposon protein7.1e-1655.56Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        M+Y N+Q + I E PN+Q Q E +  AEV++QLQ +PE+STRDR  LMW +M N+ DMKA  E+ NKLKLDY + +L+DNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

A0A5D3C5I7 Retrotransposon protein2.1e-1555.56Show/hide
Query:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA
        ++Y N Q +AI +  NVQ Q++DA  AEVM QLQ IP++STRDR  L+W +M NVH+M+A  E+ ++LKLDY   MLEDNA
Subjt:  MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATATGTGAATGACCAGTCGGAGGCCATTGTAGAATGGCCGAATGTACAACATCAATCGGAGGACGCCTTCTATGCAGAAGTCATGAAACAGTTGCAGGCAATCCC
TGAAATGAGCACTCGCGATAGAAGGTGTCTTATGTGGGCATTAATGTGCAATGTCCATGATATGAAAGCACTTTGGGAGATATCCAACAAGCTTAAATTGGACTACCGCT
TAATCATGCTCGAAGATAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATATGTGAATGACCAGTCGGAGGCCATTGTAGAATGGCCGAATGTACAACATCAATCGGAGGACGCCTTCTATGCAGAAGTCATGAAACAGTTGCAGGCAATCCC
TGAAATGAGCACTCGCGATAGAAGGTGTCTTATGTGGGCATTAATGTGCAATGTCCATGATATGAAAGCACTTTGGGAGATATCCAACAAGCTTAAATTGGACTACCGCT
TAATCATGCTCGAAGATAATGCTTGA
Protein sequenceShow/hide protein sequence
MKYVNDQSEAIVEWPNVQHQSEDAFYAEVMKQLQAIPEMSTRDRRCLMWALMCNVHDMKALWEISNKLKLDYRLIMLEDNA