CuGenDBv2

Gene ID	CSPI03G28410
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Complex1_LYR domain-containing protein
Genome location	Chr3:26012812..26013250
RNA-Seq Expression	CSPI03G28410
Synteny	CSPI03G28410
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

5.9e-52

100

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GLSLPEVYQP
Subjt:  GLSLPEVYQP

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

3.6e-49

91.82

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVKKH+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPEVYQP
Subjt:  GLSLPEVYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

1.4e-48

90.91

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPEVYQP
Subjt:  GLSLPEVYQP

XP_023544932.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo]

5.7e-47

89.09

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEA QVAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+ S +SKPHS+QQ+IKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPEVYQP
Subjt:  GLSLPEVYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

3.0e-48

91.82

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVK H+GKEESKKHFVDYVAQKFRDK+ILSKPHS+QQEIKLA DYTFLLNSVHHQKDLLFSYNIAVDRS+EMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPE YQP
Subjt:  GLSLPEVYQP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

2.8e-52

100

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GLSLPEVYQP
Subjt:  GLSLPEVYQP

A0A5D3BQE5 Complex1_LYR domain-containing protein

8.3e-44

90.65

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAK YRQLLKAVKKH+GKEESKKHFVDYVAQKFRDKSILSKPHS+QQEIKLARDYTFLLNS     DLLFSYNIAVDRSDEMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEV
        GLSLPE+
Subjt:  GLSLPEV

A0A6J1C0V5 uncharacterized protein LOC111006395

8.3e-44

82.73

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        M+SEALQVA+VYR+LLKAVK H+GKEESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLA DY  LLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPE YQP
Subjt:  GLSLPEVYQP

A0A6J1EY92 uncharacterized protein LOC111439884

1.7e-49

91.82

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVKKH+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPEVYQP
Subjt:  GLSLPEVYQP

A0A6J1HS51 uncharacterized protein LOC111467294

6.6e-49

90.91

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        MNSEALQVAKVYRQLLKAVK H+GKEE+KKHFVDYVAQKFR+KS LSKPHS+QQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRSDEMKR+LGKSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPEVYQP
Subjt:  GLSLPEVYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

5.5e-32

62.73

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Query:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV
        M+ E +  A+VYR LLKAV KHVGKE+ K HF+D+V Q+FR        ++  ++I LAR+YT+LLNS+H  KDLLFSYNIAVDR++EMKRVL KSAASV
Subjt:  MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASV

Query:  GLSLPEVYQP
        GL LPEVY+P
Subjt:  GLSLPEVYQP

Sequences

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CDS sequence

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ATGAATTCAGAAGCTTTGCAGGTAGCTAAGGTCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATGTTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGC
TCAAAAGTTCAGAGATAAATCCATACTTTCAAAACCCCACTCTATTCAACAGGAAATCAAGCTTGCTCGGGATTACACATTTCTACTCAACAGTGTGCACCATCAAAAGG
ACTTGCTGTTCTCGTACAACATTGCTGTTGATCGATCAGATGAAATGAAGCGAGTATTGGGCAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCCGAGGTCTATCAACCC
TGA

mRNA sequence

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Protein sequence

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MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLARDYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQP

CSPI03G28410 (gene) of Cucumber (PI 183967) v1 genome