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CSPI03G28750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G28750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPeptide chain release factor 1
Genome locationChr3:26363340..26364723
RNA-Seq ExpressionCSPI03G28750
SyntenyCSPI03G28750
Gene Ontology termsGO:0006415 - translational termination (biological process)
GO:0009657 - plastid organization (biological process)
InterPro domainsIPR005139 - Peptide chain release factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451621.1 PREDICTED: peptide chain release factor APG3, chloroplastic [Cucumis melo]7.9e-2260.75Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVE+VIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

XP_022151413.1 peptide chain release factor APG3, chloroplastic [Momordica charantia]1.0e-2160.75Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF P+SSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

XP_031745234.1 peptide chain release factor APG3, chloroplastic [Cucumis sativus]6.1e-2261.68Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

XP_038876731.1 peptide chain release factor APG3, chloroplastic isoform X1 [Benincasa hispida]6.1e-2261.68Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

XP_038876732.1 peptide chain release factor APG3, chloroplastic isoform X2 [Benincasa hispida]6.1e-2261.68Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

TrEMBL top hitse value%identityAlignment
A0A1S3BRZ7 peptide chain release factor APG3, chloroplastic3.8e-2260.75Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVE+VIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

A0A5A7VLD6 Peptide chain release factor APG33.8e-2260.75Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVE+VIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

A0A6J1DC40 peptide chain release factor APG3, chloroplastic5.0e-2260.75Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF P+SSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

A0A6J1KZW8 peptide chain release factor APG3, chloroplastic1.1e-2159.81Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWKF P+SSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL T RSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

D7TP29 RF_PROK_I domain-containing protein8.5e-2259.81Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        KYSERNSWK+ PVSSS                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  A+
Subjt:  LQIVLAI

SwissProt top hitse value%identityAlignment
Q2JL68 Peptide chain release factor 11.2e-1750.51Show/hide
Query:  GNVQVVMKLESELKYSERNSWKFFPVSSSKSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAISSLN
        G  + +++++ +  YS+    KF      ++G HRVQRVP TE QGR+HTST TV +M E DEVEVVIDPKDIE+ TARSGGAGG  + ++  A+  L+
Subjt:  GNVQVVMKLESELKYSERNSWKFFPVSSSKSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAISSLN

Q2JUK1 Peptide chain release factor 11.2e-1764.29Show/hide
Query:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAISSLN
        ++G HRVQRVP TE QGR+HTST TV +M E DEVEVVIDPKDIE+ TARSGGAGG  + ++  A+  L+
Subjt:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAISSLN

Q7U4H2 Peptide chain release factor 16.1e-1743.24Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        +YS++  W   P+SS+                         ++G HRVQRVP TE+QGR+HTST TV +M EAD VEV +DPKD+E++TARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAISSLN
         ++  A+  L+
Subjt:  LQIVLAISSLN

Q8DMG9 Peptide chain release factor 16.1e-1768.18Show/hide
Query:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAI
        +SG HRVQRVP TE  GRIHTST TV +M E DEVEV IDPKDIEL TARSGGAGG  + ++  A+
Subjt:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAI

Q8RX79 Peptide chain release factor APG3, chloroplastic8.2e-2257.01Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        +YSER+SWKF  VS S                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL +ARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI

Arabidopsis top hitse value%identityAlignment
AT2G47020.1 Peptide chain release factor 16.7e-1155.36Show/hide
Query:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGG
        +SG HRVQR+P TE  GRIHTS  +V I+ +ADEV+V +  +D+ + T RSGG+GG
Subjt:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGG

AT2G47020.2 Peptide chain release factor 16.7e-1155.36Show/hide
Query:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGG
        +SG HRVQR+P TE  GRIHTS  +V I+ +ADEV+V +  +D+ + T RSGG+GG
Subjt:  KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGG

AT3G62910.1 Peptide chain release factor 15.8e-2357.01Show/hide
Query:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL
        +YSER+SWKF  VS S                         +SG HRVQRVPQTETQGR+HTST TV IM EADEVEVVIDPKDIEL +ARSGGAGG  +
Subjt:  KYSERNSWKFFPVSSS-------------------------KSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTL

Query:  LQIVLAI
         ++  AI
Subjt:  LQIVLAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCCGGGAATGTACAAGTGGTGATGAAGCTGGAATCTGAGTTGAAATACAGTGAGCGGAATTCATGGAAGTTTTTCCCTGTTTCAAGTTCTAAGTCTGGT
TTTCATCGAGTTCAACGTGTTCCTCAAACAGAAACACAGGGCCGTATTCATACTTCTACGACCACAGTAGTCATCATGCTAGAGGCAGATGAAGTTGAAGTAGTG
ATTGACCCGAAGGACATTGAACTGGCTACTGCAAGATCTGGGGGCGCAGGAGGTGTAACTTTACTTCAAATAGTGCTTGCAATTAGCTCTCTGAATCTGTTCTCA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCCGGGAATGTACAAGTGGTGATGAAGCTGGAATCTGAGTTGAAATACAGTGAGCGGAATTCATGGAAGTTTTTCCCTGTTTCAAGTTCTAAGTCTGGT
TTTCATCGAGTTCAACGTGTTCCTCAAACAGAAACACAGGGCCGTATTCATACTTCTACGACCACAGTAGTCATCATGCTAGAGGCAGATGAAGTTGAAGTAGTG
ATTGACCCGAAGGACATTGAACTGGCTACTGCAAGATCTGGGGGCGCAGGAGGTGTAACTTTACTTCAAATAGTGCTTGCAATTAGCTCTCTGAATCTGTTCTCA
TAA
Protein sequenceShow/hide protein sequence
MQSGNVQVVMKLESELKYSERNSWKFFPVSSSKSGFHRVQRVPQTETQGRIHTSTTTVVIMLEADEVEVVIDPKDIELATARSGGAGGVTLLQIVLAISSLNLFS