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CSPI03G28910 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G28910
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGlutamate--tRNA ligase
Genome locationChr3:26465013..26465533
RNA-Seq ExpressionCSPI03G28910
SyntenyCSPI03G28910
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058525.1 putative transmembrane protein [Cucumis melo var. makuwa]1.5e-5094.74Show/hide
Query:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
        MDSNY AY NQNSS RPLAIVLALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTSS CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQSSVQEFLWR
        GLSWQSSVQEFLWR
Subjt:  GLSWQSSVQEFLWR

KAE8637311.1 hypothetical protein CSA_023553, partial [Cucumis sativus]5.5e-5399.12Show/hide
Query:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
        MDSNYSAYANQNSSQRPLAI LALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQSSVQEFLWR
        GLSWQSSVQEFLWR
Subjt:  GLSWQSSVQEFLWR

KAF7814039.1 hypothetical protein G2W53_028008 [Senna tora]5.9e-3164.46Show/hide
Query:  YSAYANQNSSQRPLAIVLALASAVVLSPL-----------RSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAG
        Y+AY++Q SSQR LA+VLALASAVVLSPL           R YE+ WS GFV+P++L GLI+AI+TSSS SST R +++LPS  PSWVL+IGSSSWGLAG
Subjt:  YSAYANQNSSQRPLAIVLALASAVVLSPL-----------RSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAG

Query:  ILMMLILGLSWQSSVQEFLWR
        +L+ML+L L WQ+SVQEF WR
Subjt:  ILMMLILGLSWQSSVQEFLWR

KAG6581812.1 hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4183.19Show/hide
Query:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGIL
        MDSNY AY NQ SSQRPLAIVLALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTSSSCSS S     RDSAIL SD PSWVLKIGSSSWGLAG+L
Subjt:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGIL

Query:  MMLILGLSWQSSVQEFLWR
        MMLI GLSWQSSV+EFLWR
Subjt:  MMLILGLSWQSSVQEFLWR

XP_030969466.1 uncharacterized protein LOC115989757 [Quercus lobata]5.9e-3166.1Show/hide
Query:  YANQNSSQRPLAIVLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILM
        Y +Q SSQR +A+VLAL SA+VLSPL        R YET WSSGFV+P+VL GLI+AIKT+SSCSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+
Subjt:  YANQNSSQRPLAIVLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILM

Query:  MLILGLSWQSSVQEFLWR
        ML+L LSWQ SVQEF WR
Subjt:  MLILGLSWQSSVQEFLWR

TrEMBL top hitse value%identityAlignment
A0A067KX22 Uncharacterized protein1.9e-3064.71Show/hide
Query:  YSAYANQNSSQRPLAIVLALASAVVLSP---------LRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGIL
        Y+ Y++QNSSQR LA+VLAL SAVVLSP         LR YET WSSGFV+P+VL GLI+AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL
Subjt:  YSAYANQNSSQRPLAIVLALASAVVLSP---------LRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGIL

Query:  MMLILGLSWQSSVQEFLWR
        +ML+L LSWQ SVQEF WR
Subjt:  MMLILGLSWQSSVQEFLWR

A0A0A0LEN3 Uncharacterized protein2.7e-5399.12Show/hide
Query:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
        MDSNYSAYANQNSSQRPLAI LALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQSSVQEFLWR
        GLSWQSSVQEFLWR
Subjt:  GLSWQSSVQEFLWR

A0A2N9IBH6 Uncharacterized protein3.2e-3063.03Show/hide
Query:  YANQNSSQRPLAIVLALASAVVLSPLRS--------YETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD----SAILPSDHPSWVLKIGSSSWGLAGIL
        Y  Q SSQR +A+VL+L SA+VLSPL +        YET WSSGFV+P+VL+GLI+AI+T+SSCSS S      ++I+PS  PSWVL+IGSSSWGLAGIL
Subjt:  YANQNSSQRPLAIVLALASAVVLSPLRS--------YETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD----SAILPSDHPSWVLKIGSSSWGLAGIL

Query:  MMLILGLSWQSSVQEFLWR
        +ML+L LSWQ+SVQEF WR
Subjt:  MMLILGLSWQSSVQEFLWR

A0A5A7UY99 Putative transmembrane protein7.3e-5194.74Show/hide
Query:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
        MDSNY AY NQNSS RPLAIVLALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTSS CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQSSVQEFLWR
        GLSWQSSVQEFLWR
Subjt:  GLSWQSSVQEFLWR

A0A7N2LMQ6 Uncharacterized protein2.9e-3166.1Show/hide
Query:  YANQNSSQRPLAIVLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILM
        Y +Q SSQR +A+VLAL SA+VLSPL        R YET WSSGFV+P+VL GLI+AIKT+SSCSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+
Subjt:  YANQNSSQRPLAIVLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILM

Query:  MLILGLSWQSSVQEFLWR
        ML+L LSWQ SVQEF WR
Subjt:  MLILGLSWQSSVQEFLWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGA
AACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCC
CTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAA
TTCCTCTGGAGATGA
mRNA sequenceShow/hide mRNA sequence
CCTGTTTCCCCATCTAGTTTTTGCTAACATCAAGCAGCAACTCCTTTTGTTTTTTTCTTTTGAGAAGACCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAG
AACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACT
AGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTG
GGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGAGAACCAAAACCCACTTGA
ATTTTTAATTTTGTTTGACTTATAAACTTGTATTGTTGCCACCTGATATGGATTAGAAATTTAAAGTGCATTGATCTCGGC
Protein sequenceShow/hide protein sequence
MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQE
FLWR