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CSPI03G29320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G29320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L44
Genome locationChr3:26896128..26896841
RNA-Seq ExpressionCSPI03G29320
SyntenyCSPI03G29320
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040411 - Uncharacterized protein At5g23160-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052773.1 60S ribosomal protein L44 [Cucumis melo var. makuwa]7.1e-9581.89Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-
        MADSS+  PPSKSP  FLF+CFRSSSKLP KK SSIAPR RRT S TFRFKK SATVPVDVA PSHDELSFSP+FKK PPLS I PKAPQV GEIVVDS 
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-

Query:  --SLKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI
          SLKPSQTRKKP   QSNFTTKKLSPTRK AA LHSVS PSQ LTRQKDFK+ VS HLPAAVATTSPAFSDGNKPTPKL   YPVKN DRVIMVV+VAI
Subjt:  --SLKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI

Query:  VMLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS
        ++LWGRLCAILCTTALFYLGRRMRSE+E GGGG GRG   GNS
Subjt:  VMLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS

KAG6606901.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]7.6e-4954.47Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPS-----HDELSFSPEFKKSPPLSFIMPKAPQVGGEI
        MA++SE + PSK PLHFL  CF SS K+ TKK  +      R  S  FRFKK SATVP+DVA P       D+ SFSPEFKK PP   I  +AP V  +I
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPS-----HDELSFSPEFKKSPPLSFIMPKAPQVGGEI

Query:  VVDSSLKPSQTRKKPQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIV
        V    +KPSQT KK +S      L+P ++TAALLHS+SLPS++L RQKD KK VS HL +AV T +P  S+  KP  K P   P K  D +I++V VAIV
Subjt:  VVDSSLKPSQTRKKPQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIV

Query:  MLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGR
        +LWG+LCAILCTTALFY  RR+RSE E  GGG  R
Subjt:  MLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGR

KGN58547.1 hypothetical protein Csa_002056 [Cucumis sativus]1.8e-11996.67Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDSS
        MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKK SATVPVDVADPSHDELSF PEFKKSPPLSFIMPKAPQVGGEIVVDSS
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDSS

Query:  LKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIVML
        LKPSQTRKKP   QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQK FKKPVSGHLPAAVATTSPAFSDGNKPTPKLP YYPVKNFDRVIMVVIVAIVML
Subjt:  LKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIVML

Query:  WGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS
        WGRLCAILCTTALFYLGRRMRSEIEP GGGSGRGRLSGNS
Subjt:  WGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS

XP_022949237.1 uncharacterized protein LOC111452650 [Cucurbita moschata]2.6e-4954.89Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPS-----HDELSFSPEFKKSPPLSFIMPKAPQVGGEI
        MA++SE + PSK PLHFL  CF SS K+ TKK  +   R  R  S  FRFKK SATVP+DVA P       D+ SFSPEFKK PP   I  +AP V  +I
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPS-----HDELSFSPEFKKSPPLSFIMPKAPQVGGEI

Query:  VVDSSLKPSQTRKKPQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIV
        V    +KPSQ  KK +S   +  L+P ++TAALLHS+SLPS++L RQKDFKK VS HL +AV T +P  S+  KP  K P   P K  D +I++V VAIV
Subjt:  VVDSSLKPSQTRKKPQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIV

Query:  MLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGR
        +LWG+LCAILCTTALFY  RR+RSE E  GGG  R
Subjt:  MLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGR

XP_022982640.1 uncharacterized protein LOC111481455 [Cucurbita maxima]1.1e-3949.79Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-
        MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKK SATVP+D A P HDELSFSPEF   PP S        + GEI+VDS 
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-

Query:  --SLKPSQTRKK---PQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI
          ++K S+TRKK    QSN T +KL P +KT+  LHS          +K  KK +S HLP AVA   P  S  +  + K P   P   FD V ++V VAI
Subjt:  --SLKPSQTRKK---PQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI

Query:  VMLWGRLCAILCTTALFYLGRRMRSEIE-----PGGGGSGR
        V+LWGRLCAILCT ALFYL R +RS+ E      GGG  G+
Subjt:  VMLWGRLCAILCTTALFYLGRRMRSEIE-----PGGGGSGR

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ2 Uncharacterized protein8.9e-12096.67Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDSS
        MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKK SATVPVDVADPSHDELSF PEFKKSPPLSFIMPKAPQVGGEIVVDSS
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDSS

Query:  LKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIVML
        LKPSQTRKKP   QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQK FKKPVSGHLPAAVATTSPAFSDGNKPTPKLP YYPVKNFDRVIMVVIVAIVML
Subjt:  LKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIVML

Query:  WGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS
        WGRLCAILCTTALFYLGRRMRSEIEP GGGSGRGRLSGNS
Subjt:  WGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS

A0A5A7UA28 60S ribosomal protein L443.4e-9581.89Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-
        MADSS+  PPSKSP  FLF+CFRSSSKLP KK SSIAPR RRT S TFRFKK SATVPVDVA PSHDELSFSP+FKK PPLS I PKAPQV GEIVVDS 
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-

Query:  --SLKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI
          SLKPSQTRKKP   QSNFTTKKLSPTRK AA LHSVS PSQ LTRQKDFK+ VS HLPAAVATTSPAFSDGNKPTPKL   YPVKN DRVIMVV+VAI
Subjt:  --SLKPSQTRKKP---QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI

Query:  VMLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS
        ++LWGRLCAILCTTALFYLGRRMRSE+E GGGG GRG   GNS
Subjt:  VMLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGRGRLSGNS

A0A6J1F3C2 uncharacterized protein LOC1114417601.1e-3749.39Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-
        MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKK SATVP+D A P HDELS SPEF   PP        P + GEI+VDS 
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-

Query:  --SLKPSQTRKK-------PQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVA--TTSPAFSDGNKPTPKLPAYYPVKNFDRVIM
          ++KPS+TRKK       P+S  T    +  +KT+  LHS          +K  KK +S HLP A A  TTS   SD  KP    P   P K FD VI+
Subjt:  --SLKPSQTRKK-------PQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVA--TTSPAFSDGNKPTPKLPAYYPVKNFDRVIM

Query:  VVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIE-----PGGGGSGR
        +V VAIV+LWGRLCAILCT ALFYL R +RS+ E      GGG  GR
Subjt:  VVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIE-----PGGGGSGR

A0A6J1GBH7 uncharacterized protein LOC1114526501.3e-4954.89Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPS-----HDELSFSPEFKKSPPLSFIMPKAPQVGGEI
        MA++SE + PSK PLHFL  CF SS K+ TKK  +   R  R  S  FRFKK SATVP+DVA P       D+ SFSPEFKK PP   I  +AP V  +I
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPS-----HDELSFSPEFKKSPPLSFIMPKAPQVGGEI

Query:  VVDSSLKPSQTRKKPQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIV
        V    +KPSQ  KK +S   +  L+P ++TAALLHS+SLPS++L RQKDFKK VS HL +AV T +P  S+  KP  K P   P K  D +I++V VAIV
Subjt:  VVDSSLKPSQTRKKPQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIV

Query:  MLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGR
        +LWG+LCAILCTTALFY  RR+RSE E  GGG  R
Subjt:  MLWGRLCAILCTTALFYLGRRMRSEIEPGGGGSGR

A0A6J1IZW6 uncharacterized protein LOC1114814555.4e-4049.79Show/hide
Query:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-
        MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKK SATVP+D A P HDELSFSPEF   PP S        + GEI+VDS 
Subjt:  MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDS-

Query:  --SLKPSQTRKK---PQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI
          ++K S+TRKK    QSN T +KL P +KT+  LHS          +K  KK +S HLP AVA   P  S  +  + K P   P   FD V ++V VAI
Subjt:  --SLKPSQTRKK---PQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAI

Query:  VMLWGRLCAILCTTALFYLGRRMRSEIE-----PGGGGSGR
        V+LWGRLCAILCT ALFYL R +RS+ E      GGG  G+
Subjt:  VMLWGRLCAILCTTALFYLGRRMRSEIE-----PGGGGSGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATTCTTCAGAAAATATACCTCCCTCCAAATCCCCACTCCATTTCCTCTTCAGTTGCTTCCGATCTTCCTCCAAACTTCCTACAAAAAAGGCTTCTTCGATCGC
CCCACGCATCCGCCGGACTTCGTCGCGTACTTTCCGATTCAAGAAATTCTCTGCAACTGTTCCGGTCGACGTCGCCGATCCATCTCATGATGAGCTCTCTTTTTCGCCGG
AGTTCAAGAAATCGCCTCCACTGTCGTTCATTATGCCGAAAGCGCCACAGGTCGGAGGTGAGATCGTTGTGGATTCGTCACTAAAGCCGAGTCAAACTCGGAAGAAGCCC
CAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAACAGCCGCGTTGTTGCACTCCGTATCTCTTCCTTCTCAGCAATTGACCCGCCAGAAAGATTTTAAAAA
ACCAGTCTCTGGTCATCTCCCTGCCGCCGTCGCAACCACCTCCCCGGCGTTTTCAGACGGTAATAAACCGACCCCGAAGTTGCCTGCGTATTATCCGGTCAAGAATTTCG
ATCGGGTGATTATGGTTGTTATTGTGGCGATTGTGATGTTGTGGGGACGACTATGCGCCATACTCTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAA
ATCGAACCGGGCGGCGGCGGCAGCGGCAGAGGTAGGCTAAGCGGGAATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGATTCTTCAGAAAATATACCTCCCTCCAAATCCCCACTCCATTTCCTCTTCAGTTGCTTCCGATCTTCCTCCAAACTTCCTACAAAAAAGGCTTCTTCGATCGC
CCCACGCATCCGCCGGACTTCGTCGCGTACTTTCCGATTCAAGAAATTCTCTGCAACTGTTCCGGTCGACGTCGCCGATCCATCTCATGATGAGCTCTCTTTTTCGCCGG
AGTTCAAGAAATCGCCTCCACTGTCGTTCATTATGCCGAAAGCGCCACAGGTCGGAGGTGAGATCGTTGTGGATTCGTCACTAAAGCCGAGTCAAACTCGGAAGAAGCCC
CAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAACAGCCGCGTTGTTGCACTCCGTATCTCTTCCTTCTCAGCAATTGACCCGCCAGAAAGATTTTAAAAA
ACCAGTCTCTGGTCATCTCCCTGCCGCCGTCGCAACCACCTCCCCGGCGTTTTCAGACGGTAATAAACCGACCCCGAAGTTGCCTGCGTATTATCCGGTCAAGAATTTCG
ATCGGGTGATTATGGTTGTTATTGTGGCGATTGTGATGTTGTGGGGACGACTATGCGCCATACTCTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAA
ATCGAACCGGGCGGCGGCGGCAGCGGCAGAGGTAGGCTAAGCGGGAATTCTTGA
Protein sequenceShow/hide protein sequence
MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKFSATVPVDVADPSHDELSFSPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKP
QSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKDFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPAYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSE
IEPGGGGSGRGRLSGNS