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CSPI03G29380 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G29380
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationChr3:26955763..26959797
RNA-Seq ExpressionCSPI03G29380
SyntenyCSPI03G29380
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-6879.29Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP
        FKDQSQACEFESKWK++ RK+ + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP

XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]6.2e-9399.41Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]5.8e-8391.18Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKE+DVGKQLD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]5.3e-6879.29Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP
        FKDQSQACEFESKWK++ RK+ + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]1.0e-7987.65Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  KP  SN  LSKSSSSS+KDP LIVKSEPKP  KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQ QACEFESKWK+VSRKISY+KKE+D+GKQ+DDQTLRLLKHR+RALGKVKCLFDCSQFEF+WKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein3.0e-9399.41Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKEEDVGK LDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx12.8e-8391.18Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKE+DVGKQLD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX11.3e-6474.57Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT
        MRLLSHTFRC K PISNP    SSSSS+KDP   TL  +S+ KP  K WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC 
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACT

Query:  IHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        IHGFKDQSQACEFESKWK+VSRKI++++K++D  +Q D+Q LRLLK+R+RAL KVK +FDCS+FEFD +LDPF
Subjt:  IHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx12.6e-6879.29Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP
        FKDQSQACEFESKWK++ RK+ + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X13.3e-6878.24Show/hide
Query:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG
        MRLLS TFR  K PIS+P +SKSSSSS+K PTL +KSE  P+ K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHG
Subjt:  MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
        FK+QSQACEFESKWK++ RK+S+ +KEE     +DDQTLRLLK R+RALGKVK LFDC+QFEFDW+LDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX11.5e-0944.12Show/hide
Query:  YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKK
        Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF  +  A +FE  W+K
Subjt:  YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKK

B6JY16 Structure-specific endonuclease subunit slx15.0e-1347.89Show/hide
Query:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK
        +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +  A +FE  W+
Subjt:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK

B6QFH5 Structure-specific endonuclease subunit slx11.8e-1044.44Show/hide
Query:  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWKKV
        PKP    +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++ A +FE  W+ V
Subjt:  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWKKV

B8MDD1 Structure-specific endonuclease subunit slx15.2e-1042.5Show/hide
Query:  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWKKV
        KP    +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++ A +FE  W+ V
Subjt:  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIHGFKDQSQACEFESKWKKV

Q9P7M3 Structure-specific endonuclease subunit slx17.3e-1244.59Show/hide
Query:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKV
        +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF ++  A +FE  W+ +
Subjt:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKV

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal1.3e-0843.86Show/hide
Query:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK
        +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Subjt:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal1.2e-4153.76Show/hide
Query:  RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC
        RLLS TF  VK   SNP  P  K+  +S     +   S P+     PK K W VYLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC

Query:  ACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL
        AC I GF   SQA  FESKWK  +RK+   KK+ED+      Q+  LL+HR RAL KV+   DCS  E DWK+
Subjt:  ACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATC
AGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGCGTCACCCTTGACTTCGATCGACGTTTGAAAC
AACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTT
GAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAG
AGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATC
AGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGCGTCACCCTTGACTTCGATCGACGTTTGAAAC
AACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTT
GAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAG
AGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACTTGGGTTGTGGTTTTTCTTTTTCTTTTAC
AAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTTTATAAGATAAATATCTCAT
Protein sequenceShow/hide protein sequence
MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEF
ESKWKKVSRKISYEKKEEDVGKQLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF