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CSPI03G29580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G29580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal protein
Genome locationChr3:27127191..27130033
RNA-Seq ExpressionCSPI03G29580
SyntenyCSPI03G29580
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048381.1 Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa]1.3e-4093.07Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MNSLARNISCSIRSSI TNCLQ+QQWRGIRVKVL+GGLERALTVLQRKMQSSGIERLIKREQ+HHIKNSEKRVLARKTLERKI+S+DLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  R
        R
Subjt:  R

KAG6581566.1 Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3784.26Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI
        MNSL+RN+SCSIRSS+ TNCLQH     QQWRGIRVKVL G LERALT LQRKM+SSGIERLIKREQ HHIKNSEKRVLARK LERKI+S+DLARKLKAI
Subjt:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL

XP_004149720.1 uncharacterized protein LOC101216913 [Cucumis sativus]1.3e-45100Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  RGL
        RGL
Subjt:  RGL

XP_008461813.1 PREDICTED: uncharacterized protein LOC103500324 [Cucumis melo]2.0e-4192.23Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MNSLARNISCSIRSSI TNCLQ+QQWRGIRVKVL+GGLERALTVLQRKMQSSGIERLIKREQ+HHIKNSEKRVLARKTLERKI+S+DLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  RGL
        RG+
Subjt:  RGL

XP_022934889.1 uncharacterized protein LOC111441929 [Cucurbita moschata]1.3e-3784.26Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI
        MNSL+RN+SCSIRSS+ TNCLQH     QQWRGIRVKVL G LERALT LQRKM+SSGIERLIKREQ HHIKNSEKRVLARK LERKI+S+DLARKLKAI
Subjt:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL

TrEMBL top hitse value%identityAlignment
A0A0A0LCD1 Uncharacterized protein6.4e-46100Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  RGL
        RGL
Subjt:  RGL

A0A1S3CG17 uncharacterized protein LOC1035003249.5e-4292.23Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MNSLARNISCSIRSSI TNCLQ+QQWRGIRVKVL+GGLERALTVLQRKMQSSGIERLIKREQ+HHIKNSEKRVLARKTLERKI+S+DLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  RGL
        RG+
Subjt:  RGL

A0A5A7U491 Ribosomal protein S21 family protein isoform 16.2e-4193.07Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MNSLARNISCSIRSSI TNCLQ+QQWRGIRVKVL+GGLERALTVLQRKMQSSGIERLIKREQ+HHIKNSEKRVLARKTLERKI+S+DLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  R
        R
Subjt:  R

A0A6J1F3V2 uncharacterized protein LOC1114419296.4e-3884.26Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI
        MNSL+RN+SCSIRSS+ TNCLQH     QQWRGIRVKVL G LERALT LQRKM+SSGIERLIKREQ HHIKNSEKRVLARK LERKI+S+DLARKLKAI
Subjt:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL

A0A6J1J5L6 uncharacterized protein LOC1114815078.3e-3884.26Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI
        MNSL+RN+SCSIRSS+ TNCL+H     QQWRGIRVKVL G LERALT LQRKMQSSGIERLIKREQ HHIKNSEKRVLARK LERKI+S+DLARKLKAI
Subjt:  MNSLARNISCSIRSSIPTNCLQH-----QQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAI

Query:  LIKKVRGL
        LIKKVRGL
Subjt:  LIKKVRGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26360.1 Ribosomal protein S21 family protein4.7e-2562.14Show/hide
Query:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV
        MN++A+ ++  +  + P+   Q QQ RGIRVKV    L++ALT+LQ+KMQSSG+ERLIK  Q HHIKNSEK+VLARK LER+I+S D ARKL++ILIKKV
Subjt:  MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKV

Query:  RGL
        RGL
Subjt:  RGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCGTTGGCGCGGAACATTTCGTGCTCCATCAGATCTTCGATTCCCACCAATTGTCTACAGCACCAGCAATGGAGGGGGATCCGAGTGAAGGTGTTGAGAGGGGG
TCTAGAGCGGGCACTGACAGTTCTGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAGCGTGAACAAGTTCATCATATCAAGAATTCCGAGAAACGGGTTT
TGGCCAGAAAGACTTTAGAGCGCAAAATTCAATCCAAGGACCTCGCTCGCAAACTTAAAGCCATCCTTATAAAGAAAGTCAGGGGTCTGTAA
mRNA sequenceShow/hide mRNA sequence
TCCATGGGTAGGGTTGTTAAAAATATTAATTTTTCTGTATTTATAATTTTAAAAAATAGGTAACTATTATTACTAAATTTACTAAATTACCTCTAGGGGCTAGAGAGCCC
GAAACAGTTTTTGTTTCACGCCGTCGAACCCTATCTCTCTTCCCAACCTTTCTTCTTTGTTCTTCCTTCCAAGTCTCGACCGTCTTTCACCGCCACCTTCCATCGCCGCC
GCCTCATGTATTTGGAATAACCACCACCTATCCGCCATCAACGTAGCCCACTACATCTCCTGTGAGAACGAAAAACAGAGGGAAATGAACTCGTTGGCGCGGAACATTTC
GTGCTCCATCAGATCTTCGATTCCCACCAATTGTCTACAGCACCAGCAATGGAGGGGGATCCGAGTGAAGGTGTTGAGAGGGGGTCTAGAGCGGGCACTGACAGTTCTGC
AAAGGAAGATGCAATCGAGTGGAATCGAGCGACTGATTAAGCGTGAACAAGTTCATCATATCAAGAATTCCGAGAAACGGGTTTTGGCCAGAAAGACTTTAGAGCGCAAA
ATTCAATCCAAGGACCTCGCTCGCAAACTTAAAGCCATCCTTATAAAGAAAGTCAGGGGTCTGTAAACATCTGACTTTTGTAGTATGGTTGGCATCTTGCTCCTTTTTCT
TTGGATCCCTACTTTAACTCTGGATTGGCTACCTCTTAGAAGTGCAATTGAAGCTCCTTTATTCAGCAGGATGGCTCCAGTGAGTTCTTTTTTATTTTTATTTTTTTAAT
CTACATTGCTTTCTATCAATTCTGTTTTCTCCTATATTGTGAGCTATTTTTCATGCCCGCTATGGATGCTTCTCAAATCACTCTGTCTTCCTCTTTGATCATTTTCTACC
ACCTGCACTTTTGTTGGTTTTCTCTGTAACTTCATATTTTGAAATACTATGAATGATGTAATGGGTCCATATAGCTCATGAGCATAATAAAAAGGTTAAAAATAACTGCT
CTATTTAATTTGAGGTAGTTTGTTTGTAAGAAGAGAGGAGAATGATGGAACAATTAAGATTTAAGTTTATTAATAAGATTGTAAATAGTTGAATG
Protein sequenceShow/hide protein sequence
MNSLARNISCSIRSSIPTNCLQHQQWRGIRVKVLRGGLERALTVLQRKMQSSGIERLIKREQVHHIKNSEKRVLARKTLERKIQSKDLARKLKAILIKKVRGL