; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G30100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G30100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationChr3:27536400..27536849
RNA-Seq ExpressionCSPI03G30100
SyntenyCSPI03G30100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER27960.1 DNA-directed RNA polymerase subunit beta' [Striga asiatica]5.4e-0829.88Show/hide
Query:  VHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPH---------------------LLLVILTRRY----LRNTIRRQVNRTINIFNH
        VH P+PD+  V L  V+R +NN+     +RPK + K+QKP Q H                        LLLVI+   +    L  ++ R++   +++ N+
Subjt:  VHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPH---------------------LLLVILTRRY----LRNTIRRQVNRTINIFNH

Query:  NHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTI
        N R  RR++KK  +L ++ +  Q +I+H+V E+I H     R    RR  +++  FPS ++  I
Subjt:  NHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTI

GER27984.1 DEAD/DEAH box helicase [Striga asiatica]2.7e-0742.5Show/hide
Query:  RQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPP
        RQ+NRT+NI N+ +RP+    ++  ++RI  N+RQ QII+I  E +RH   QARFP  RR +KQ+   P  A+  +++ P
Subjt:  RQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPP

KAG6547107.1 hypothetical protein Mapa_011358 [Marchantia paleacea]5.6e-0525.81Show/hide
Query:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTR-------RYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLR
        +HVH+    Q RV L  ++  ++ D L    RP+++ ++++PRQ     LL   + R         L   + RQV R +++ NH+  PV  + ++  +L 
Subjt:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTR-------RYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLR

Query:  IIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGK
        +  +L Q Q++ +VA  + +  + A     RR ++Q+   P  A++ +     GK
Subjt:  IIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGK

RDY09270.1 hypothetical protein CR513_06367, partial [Mucuna pruriens]7.0e-0829.27Show/hide
Query:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRH--------------APHLLLVILTRRYLRNTI--------RRQVNRTINIFNHN
        MH+HSPTP Q RV L  V+ C++ + L P   P++I KIQ+ RQR               + HL +++      R+ +          +V+  INI +  
Subjt:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRH--------------APHLLLVILTRRYLRNTI--------RRQVNRTINIFNHN

Query:  HRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIK
               ++K  +  ++ +L Q QI++I+AE I H  N A F    R+I+++  FP  ++  +K
Subjt:  HRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIK

TVT97196.1 hypothetical protein EJB05_57568, partial [Eragrostis curvula]2.5e-0528.28Show/hide
Query:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQ
        +HVH     Q  V   PVIR +++D L PT RP+ I                              +VN  +N+FN+    V   +KK  ++R+  +L Q
Subjt:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQ

Query:  FQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPP
         +I+++  E I HC ++A    SRR I+Q+   P  A+  + + P
Subjt:  FQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPP

TrEMBL top hitse value%identityAlignment
A0A0A0L9K8 Uncharacterized protein5.3e-7899.33Show/hide
Query:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQ
        MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRK+QKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQ
Subjt:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQ

Query:  FQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKRH
        FQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKRH
Subjt:  FQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKRH

A0A371I2K5 Uncharacterized protein (Fragment)3.4e-0829.27Show/hide
Query:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRH--------------APHLLLVILTRRYLRNTI--------RRQVNRTINIFNHN
        MH+HSPTP Q RV L  V+ C++ + L P   P++I KIQ+ RQR               + HL +++      R+ +          +V+  INI +  
Subjt:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRH--------------APHLLLVILTRRYLRNTI--------RRQVNRTINIFNHN

Query:  HRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIK
               ++K  +  ++ +L Q QI++I+AE I H  N A F    R+I+++  FP  ++  +K
Subjt:  HRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIK

A0A5A7P5A9 DNA-directed RNA polymerase subunit beta2.6e-0829.88Show/hide
Query:  VHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPH---------------------LLLVILTRRY----LRNTIRRQVNRTINIFNH
        VH P+PD+  V L  V+R +NN+     +RPK + K+QKP Q H                        LLLVI+   +    L  ++ R++   +++ N+
Subjt:  VHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPH---------------------LLLVILTRRY----LRNTIRRQVNRTINIFNH

Query:  NHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTI
        N R  RR++KK  +L ++ +  Q +I+H+V E+I H     R    RR  +++  FPS ++  I
Subjt:  NHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTI

A0A5A7P603 DEAD/DEAH box helicase1.3e-0742.5Show/hide
Query:  RQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPP
        RQ+NRT+NI N+ +RP+    ++  ++RI  N+RQ QII+I  E +RH   QARFP  RR +KQ+   P  A+  +++ P
Subjt:  RQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPP

T1MIG6 Uncharacterized protein1.5e-1125.6Show/hide
Query:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLL-----LVILTRRYL--------------RNTIRRQVNRTINIFNHNHRP
        +HVH P P QRRV+   V+R +++D+L    RP+++ ++++P + H P ++     +V+   R +              +  +  +V   +++ + N R 
Subjt:  MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLL-----LVILTRRYL--------------RNTIRRQVNRTINIFNHNHRP

Query:  VRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKR
        V RL+++R ++ +  +  + ++ H+V E +RH  +Q R   +RR+++++P  P   +  ++LPP G+R
Subjt:  VRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGTCCATTCTCCCACACCGGACCAACGCCGGGTCAATCTTTTCCCGGTAATTCGTTGTAAAAACAACGATTCTCTCTTCCCCACAACAAGACCAAAGTCCATCCG
TAAAATTCAAAAGCCCCGACAACGTCACGCGCCCCATCTCCTCCTCGTGATCCTCACGCGCCGCTACCTTCGTAACACGATCCGCCGTCAAGTCAACCGAACAATCAATA
TCTTCAATCACAATCACCGACCGGTTCGTCGTCTGAATAAGAAGCGAACGAAGCTCAGAATTATCAGAAACCTTCGTCAATTCCAAATCATACACATCGTAGCAGAGGAA
ATTCGCCATTGCCGCAATCAAGCTCGATTTCCCAGATCCAGGAGGTCCATAAAGCAGATACCCACGTTTCCAAGCACGGCCAACTCTACTATAAAACTCCCTCCCGGCGG
CAAACGCCAT
mRNA sequenceShow/hide mRNA sequence
ATGCACGTCCATTCTCCCACACCGGACCAACGCCGGGTCAATCTTTTCCCGGTAATTCGTTGTAAAAACAACGATTCTCTCTTCCCCACAACAAGACCAAAGTCCATCCG
TAAAATTCAAAAGCCCCGACAACGTCACGCGCCCCATCTCCTCCTCGTGATCCTCACGCGCCGCTACCTTCGTAACACGATCCGCCGTCAAGTCAACCGAACAATCAATA
TCTTCAATCACAATCACCGACCGGTTCGTCGTCTGAATAAGAAGCGAACGAAGCTCAGAATTATCAGAAACCTTCGTCAATTCCAAATCATACACATCGTAGCAGAGGAA
ATTCGCCATTGCCGCAATCAAGCTCGATTTCCCAGATCCAGGAGGTCCATAAAGCAGATACCCACGTTTCCAAGCACGGCCAACTCTACTATAAAACTCCCTCCCGGCGG
CAAACGCCAT
Protein sequenceShow/hide protein sequence
MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEE
IRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKRH